Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1561
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.2  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    23   3.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   6.8  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   6.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.8  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 179 QTKLTRPRCSQGSVKDTPKYSEPNNLKKA 265
           Q  L  P CS+ S   TP +S  ++   A
Sbjct: 188 QILLPTPTCSEASSSPTPSHSSESSFSAA 216


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 TRPRCSQGSVKDTPKYSEPNNLKKA 265
           T+P+  QG++ +  + S+PN L  A
Sbjct: 66  TKPKIMQGAISNHIQGSKPNILSSA 90


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/57 (21%), Positives = 23/57 (40%)
 Frame = +3

Query: 309  VVWCCSVNHNLK*LYCILVMAY*RGVCFSIKNNLEYFYATFFFFSYIKCSVHGDYLH 479
            +VW   V  +   + C   + Y   VC++    +      F+   + K S  G+ +H
Sbjct: 990  IVWLHLVYISFLGIICAADVFYICHVCYATIQEVRAKIYFFYLVKFYKVSKSGELIH 1046


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/57 (21%), Positives = 23/57 (40%)
 Frame = +3

Query: 309 VVWCCSVNHNLK*LYCILVMAY*RGVCFSIKNNLEYFYATFFFFSYIKCSVHGDYLH 479
           +VW   V  +   + C   + Y   VC++    +      F+   + K S  G+ +H
Sbjct: 271 IVWLHLVYISFLGIICAADVFYICHVCYATIQEVRAKIYFFYLVKFYKVSKSGELIH 327


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 90  PNGILAQIGGKRQGPAEDHQNDL 158
           P     QIG +R  P   HQN++
Sbjct: 385 PESPYPQIGSERATPVGYHQNEV 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,511
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)