Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1561
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   3.2  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   7.5  

>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 198 GRVNFVWTLVFAEEGRFGGLQQALAVFRRSAPVYRL 91
           GR  F WTLV + EG      + +   RR+ P+ R+
Sbjct: 532 GREGFAWTLVQSHEGHH--FSKLVKQLRRTLPIKRI 565


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 143 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKK-AVIVQFSRVKDLSGQ 307
           P  +PS+ +      L+  R S+ S   +P+  EP+  KK AV +Q S+ +  S +
Sbjct: 487 PKAKPSTERPETHRTLSYSRLSELSKTFSPEIREPSLTKKTAVSMQESKEEGRSDE 542


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 164  PKKVVLVVFSRPLPFSADLRQY 99
            P KV    FS P+P SADLR+Y
Sbjct: 1342 PSKVE--AFSIPVPISADLRKY 1361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,798
Number of Sequences: 5004
Number of extensions: 71237
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)