Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1561
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.37 
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_28431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)                     28   8.0  

>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 152 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQFSRVKDLSGQCCVVL 322
           RPSS +   +TK   PR  + + + TPK S+ +NL  A   Q  R K ++      L
Sbjct: 404 RPSSRRNPRETKTNTPRSRRSNSRKTPK-SKKSNLSTAASDQSERSKSIASHASTSL 459


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 8   TGRISRTKWTKES*LAALRDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKT-RVQT 184
           T + SR +  + S  ++   +SP     K+ + A +R+++ +    PKR +  K  R+++
Sbjct: 48  TSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSSSSSPKRKTKKKQHRLKS 107

Query: 185 KLTRPRCSQGSVKDTPKYSEPN 250
             TR + S  S   +P+    N
Sbjct: 108 GNTRSQTSSSSAASSPERKSGN 129


>SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 140 RPPK-RPSSAKTRVQTKLTRPRCSQGSVKD-TPKYS-EPNNLKKAVIVQFSRVKDL 298
           RPP  RP SAK R +++  RP  SQ    D  P +  +P  L++   V FSR   L
Sbjct: 116 RPPSSRPQSAKGRPRSRSGRPMSSQSRGSDIIPDHEMQPKQLQQQ-CVSFSRYTPL 170


>SB_28431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 520 FKDTIVFLNSTKRQCK*SPCTLHFIYEKKKNV 425
           F D   F   T R C+  PC L FIY +  N+
Sbjct: 27  FVDLRQFFGGTHRICQFQPCQLIFIYRRSLNL 58


>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 RKTARAC*RPPKRPSSAKTRVQTKLT 193
           R+ ARAC R PK PS++ T    K T
Sbjct: 541 RRDARACARAPKMPSASYTHQSRKAT 566


>SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 152 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQFSRVKDLSGQCC 313
           +P      +Q    R +    S +  P+Y+  NN   A+  Q+SR K  S QCC
Sbjct: 15  KPEKLPLHIQRATKRNKIFVISPRVKPRYT--NNRTTAICGQYSRSKRKSYQCC 66


>SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -2

Query: 804 LGINNTNKT*IQRHSKLHRPFDR--RIHYLTSQNFLA*R----SGNQAIIT 670
           L +N TNK  + +H+ +H P      + Y + Q FLA R    S N A +T
Sbjct: 57  LRVNKTNKDPVDKHNPIHNPSPTPLTLRYQSLQTFLAPRPVTLSQNAATVT 107


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 149 KRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQ 277
           KRP  A +R+QT L +   +Q +VK +P    P+ ++   I+Q
Sbjct: 685 KRPQCATSRIQTPLVQ---NQSNVKSSPPDIGPSRIEDTNILQ 724


>SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)
          Length = 189

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 381 GVCFSIKNNLEYFYATFFFF 440
           G+C S+ N LE F+ +FFF+
Sbjct: 70  GICRSLNNLLERFHQSFFFY 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,793,069
Number of Sequences: 59808
Number of extensions: 504576
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)