Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1561
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 1.0
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z81088-9|CAB03126.1| 335|Caenorhabditis elegans Hypothetical pr... 28 9.4
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 28 9.4
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 28 9.4
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 143 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKA 265
PPK PS + TK R S GS TPK+++P+ KA
Sbjct: 469 PPKEPSISSEPTTTKKPRKSFSPGSA--TPKHTQPSENGKA 507
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 250
R T R+ RPP+ P+S RV T P QG+ P+ S PN
Sbjct: 438 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 481
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 250
R T R+ RPP+ P+S RV T P QG+ P+ S PN
Sbjct: 442 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 485
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 825 FFNEKYSLGINNTNKT*IQRHSKLHRP---FDRRIHYLTSQNFLA*RSGNQAIITLLQKK 655
F+N+K S+ +N+ + H P F+R +Y + F +S Q ++ QK+
Sbjct: 1438 FWNDKKSMNMNDEYT--YPSYELYHFPNNIFERGQYYPLATAFS--KSSKQNVVEWYQKR 1493
Query: 654 NCGWTYWTIRKHSL 613
C +TY I +HSL
Sbjct: 1494 LCSFTY--ILRHSL 1505
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 AVTRSKRYTG-ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 232
A +RSK A RR++ A PP P AK+R ++ R R S + K P
Sbjct: 334 AKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPP 386
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 825 FFNEKYSLGINNTNKT*IQRHSKLHRP---FDRRIHYLTSQNFLA*RSGNQAIITLLQKK 655
F+N+K S+ +N+ + H P F+R +Y + F +S Q ++ QK+
Sbjct: 1438 FWNDKKSMNMNDEYT--YPSYELYHFPNNIFERGQYYPLATAFS--KSSKQNVVEWYQKR 1493
Query: 654 NCGWTYWTIRKHSL 613
C +TY I +HSL
Sbjct: 1494 LCSFTY--ILRHSL 1505
>Z81088-9|CAB03126.1| 335|Caenorhabditis elegans Hypothetical
protein F53F1.9 protein.
Length = 335
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 348 LYCILVMAY*RGVCFSIKNNLEYFYATFFFFSYIKCSVHGDYLHCLLVEFKKTI 509
+ C L + Y V +S++ N TF+F+ I C ++ L+ F K I
Sbjct: 245 IVCFLELVYFAFVVYSLQINQTMNKRTFYFYYNILCVIYSTVSAWTLLIFSKPI 298
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 429 FFFFSYIKCSVHGDYLHCLLVEFKKTIVSLNYKC*IV 539
F FF IK S HG+ L C+L+ + T+++ IV
Sbjct: 52 FIFFKLIKSSFHGN-LKCVLIGYFVTVLAFTINFQIV 87
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 429 FFFFSYIKCSVHGDYLHCLLVEFKKTIVSLNYKC*IV 539
F FF IK S HG+ L C+L+ + T+++ IV
Sbjct: 52 FIFFKLIKSSFHGN-LKCVLIGYFVTVLAFTINFQIV 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,722,307
Number of Sequences: 27780
Number of extensions: 396461
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -