Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1560
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    29   0.61 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    28   1.4  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   3.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   7.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   10.0 

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 777 GSSQSLSALLSIPNTRHRPRQKRQSSVTLTRHSPLS 670
           G ++S S +   PNT +RP   R  S   TR SPL+
Sbjct: 307 GLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLN 342


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 765  SLSALLSIPNTRHRPRQKRQSS 700
            S+ A+LS+PN   RPR+K+Q +
Sbjct: 953  SIIAMLSVPNIWSRPREKQQEA 974


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  FRYLPKLNTE*HKWLWDIFLNVHKKKAITFLP 185
           F +LP  N E   + W +F + + +KA T  P
Sbjct: 167 FHFLPMNNKESFHYAWSLFTSTYFQKAATVSP 198


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 171 LPSFCGRLRKYPTTICVIP 115
           LP  CGR R YP   C  P
Sbjct: 620 LPCTCGRTRLYPPVACGTP 638


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 419 SIFINLFTLAKIINNVSFFL 478
           SIF NLF L K+IN    FL
Sbjct: 53  SIFDNLFNLFKVINTTYTFL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,142
Number of Sequences: 5004
Number of extensions: 59778
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)