Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1560
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24975| Best HMM Match : ET (HMM E-Value=1)                          29   3.5  
SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)                 29   6.1  
SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_24975| Best HMM Match : ET (HMM E-Value=1)
          Length = 316

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
 Frame = -3

Query: 813 NEQPPSSW-----------TLSFGSSQSLSALLSI-PNTRHRPRQKRQSSVTLTRHSPLS 670
           N+ PPSSW                 S S++A +S+ PNT   P     +SV++T ++PLS
Sbjct: 71  NQHPPSSWIPLKHRVPVTTNTPLSPSASVTASVSVTPNTPLSPSASVTASVSVTPNTPLS 130

Query: 669 FLANL 655
             A++
Sbjct: 131 LSASV 135


>SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)
          Length = 423

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 169 AFFLWTFKKISHNHLCYSVFNFGRYLNYSR*FKIIYVTQFLL 44
           A + +TF+ +  NH  Y + ++  Y +  R  +  Y+ QF+L
Sbjct: 235 AIYFYTFRLLEWNHNTYCILDWQPYTDSMRAQRPFYMCQFVL 276


>SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 229 TLKSIRRNWFNFNKRSFGFDVLN*FISTVYNENNRLSINITLKNNVGPYLKG 384
           TL+ IR +     K+ F F  ++ ++ T  N +N L ++  +  +   YL+G
Sbjct: 127 TLRWIRVDESRIRKKKFAFSEISGYVWTSVNVSNTLCVDAEIFASAKKYLRG 178


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 828  MSRRCNEQPPSSWTLSFGSSQSLSALLS 745
            M + CN +P + W +  G  + LSALL+
Sbjct: 1149 MCQECNARPVTMWCVLVGKKRPLSALLT 1176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,159,494
Number of Sequences: 59808
Number of extensions: 412203
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)