Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1560
(830 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 8.0
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 8.0
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 8.0
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 8.0
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 8.0
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 8.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = +2
Query: 740 GMLKSAESDWEEPNDNVQDDGGCSL 814
G + E +WE N++ D C++
Sbjct: 337 GEIPLEEEEWENENESDYQDAFCNI 361
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNY 106
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNY 339
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 313 VYNENNRLSINITLKNNVGPYLKGAY 390
+ + NN LS N NN Y K Y
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNY 339
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,745
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -