Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1558X
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 85 3e-17
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 77 7e-15
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 73 9e-14
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 43 1e-04
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 41 4e-04
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 40 8e-04
07_03_1596 - 28012392-28012799 29 2.6
07_03_1080 + 23815232-23817040 28 3.4
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 28 3.4
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 28 4.5
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 5.9
08_01_0965 + 9739150-9739557 27 5.9
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 5.9
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809... 27 7.8
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 85.0 bits (201), Expect = 3e-17
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = +2
Query: 23 GRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
GR + W+P L + I+ DHGY A+S AI L++I+A + E+Q F QFVTG+PRLP GG
Sbjct: 1648 GRREIWEPDSLVDNIKFDHGYTAKSPAIVNLLEIMAEFTPEQQHAFCQFVTGAPRLPPGG 1707
Query: 203 FKALTPPLTVVRK 241
AL P LT+VRK
Sbjct: 1708 LAALNPKLTIVRK 1720
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/57 (57%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Frame = +1
Query: 241 IAGVLLDPDEYLPSVMTCVNYLKLPDYS------SAEVMXAKLRLAASEGQHSFHLS 393
IAGV D+ LPSVMTC NYLKLP YS S EVM KL A EG+ SF LS
Sbjct: 1731 IAGVTESADDDLPSVMTCANYLKLPPYSTKVRFLSLEVMRKKLLYAILEGRGSFDLS 1787
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 77.0 bits (181), Expect = 7e-15
Identities = 35/77 (45%), Positives = 47/77 (61%)
Frame = +2
Query: 23 GRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
G WD L + I+ DHGY + S + L++++ + ++R FLQF+TGSPRLP GG
Sbjct: 1362 GEQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGG 1421
Query: 203 FKALTPPLTVVRKSLES 253
AL P LTVVRK S
Sbjct: 1422 LAALNPKLTVVRKQHNS 1438
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 259 DPDEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
+ D+ LPSVMTC NYLKLP YSS + M KL A +EGQ SFHLS
Sbjct: 1440 EADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHLS 1484
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 73.3 bits (172), Expect = 9e-14
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 23 GRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
G W L + I D+GY+A S ++ ++IL + RE+QR FL F TG+P+LP GG
Sbjct: 1200 GEQDSWASNKLEDHINFDYGYDANSASVISFLEILREFGREDQRAFLHFTTGAPQLPLGG 1259
Query: 203 FKALTPPLTVVRKSLE 250
+L P LTVVRK +
Sbjct: 1260 LASLDPKLTVVRKQCD 1275
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
D LPSV TC ++ KLP YSS E+M KL+ A EG SF LS
Sbjct: 1279 DNELPSVNTCRHFFKLPPYSSKEIMRQKLKYAIKEGLGSFQLS 1321
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 80 GYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
GY+ S I +++ +++E+ FLQFVTG+ ++P GFKAL
Sbjct: 3534 GYSPASPVILWFWEVVNGFSKEDMARFLQFVTGTSKVPLEGFKAL 3578
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 268 EYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSF 384
E LPS TC N L LP+YSS E + +L LA E F
Sbjct: 3597 ERLPSAHTCFNQLDLPEYSSKEQLEERLLLAIHEASEGF 3635
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 80 GYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALTPPLTVVR 238
GY+ + I + ++L S++ Q+ FL+FVTG R P GF+ L P + R
Sbjct: 926 GYHPDHELIDIFWEVLKSFSSHNQKKFLKFVTGCSRGPLLGFQYLEPKFCIQR 978
Score = 33.9 bits (74), Expect = 0.068
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 241 IAGVLLDPDEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
+ G+ + ++ LP+ TC+N LKLP Y + + +KL L A + F LS
Sbjct: 981 VPGMEEEDEDRLPTSATCMNLLKLPPYRNKTQLESKL-LYAINAEAGFDLS 1030
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +2
Query: 17 SGGRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPT 196
SGG Q +D L + GY SR++++ +++ + E+ L+FVT R P
Sbjct: 1046 SGGL-QDFDVDDLRNNTKYTGGYTESSRSVKLFWEVIKGFKPTERCMLLKFVTSCSRAPL 1104
Query: 197 GGFKALTPPLTV 232
GFK L P T+
Sbjct: 1105 LGFKYLQPSFTI 1116
Score = 33.9 bits (74), Expect = 0.068
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
LPS TC N LKLP Y + + +KL A S F LS
Sbjct: 1137 LPSASTCYNTLKLPTYKRSSTLRSKLLYAISSNT-GFELS 1175
>07_03_1596 - 28012392-28012799
Length = 135
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 5 RGSPSGGRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQR 154
RGS +GG+++RW PR + + G A R I + S RE +R
Sbjct: 59 RGSAAGGQERRWRPRAVLQRGTAGDG-GARRRGITAIGGGTESKTRERKR 107
>07_03_1080 + 23815232-23817040
Length = 602
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 8 GSPSGGRDQRWDPRMLAECIRPDHGYNAE--SRAIRMLIDILASYNREEQRHFLQFVTG- 178
G+ GG RW ++L EC R +++ + + ML ++ + Y EQ+ F+ G
Sbjct: 181 GAVGGGGGGRWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGL 240
Query: 179 SPRLPTGGFKAL 214
RL G + L
Sbjct: 241 FARLTASGPRTL 252
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 213 NALNPPVGSLGLPVTNCKKCRCSSRLYE 130
N + P G+ G NC +C CSS Y+
Sbjct: 236 NLMLLPDGTYGFTAGNCIRCSCSSTTYQ 263
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 35 RWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNR----EEQRHFLQFVTGSPRLPT 196
R P +L +C+ H +ESR ++A+Y R EE R L + S PT
Sbjct: 146 RQGPALLDKCLEVFHDLPSESRTALSYTSLIAAYARNALHEEARELLDQMKASGVAPT 203
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHL 390
LPS TC L LP Y S +V +L+ E FH+
Sbjct: 793 LPSSHTCFYRLCLPAYPSLKVTRNQLQKITQEHASIFHI 831
>08_01_0965 + 9739150-9739557
Length = 135
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 5 RGSPSGGRDQRWDPRMLAE 61
RGS +GG+++RW PR + +
Sbjct: 59 RGSAAGGQERRWRPRAVLQ 77
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 256 LDPDEYLPSVMTCVNYLKLPDYSSAEVM 339
L PD+ LP+V C N + PD+ + E +
Sbjct: 806 LSPDDVLPAVYLCTNKIS-PDHENIEAL 832
>01_03_0140 -
12979580-12980158,12980297-12980479,12980721-12980914,
12980974-12980998
Length = 326
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 243 DLRTTVSGGVNALNPPVGSLGLPVTNCKKCRCSSRLYEAKISISM-RIARDSALYP 79
DL + GG + PPV G PV+ + R Y IS M ++ S + P
Sbjct: 2 DLSVFIHGGAYHIRPPVPPSGTPVSPVGRLRSVHSAYSLIISHYMSKVKAQSVVCP 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,462
Number of Sequences: 37544
Number of extensions: 284063
Number of successful extensions: 738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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