Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1558X
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25557| Best HMM Match : HECT (HMM E-Value=0) 62 3e-10
SB_12797| Best HMM Match : HECT (HMM E-Value=0) 43 1e-04
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_44630| Best HMM Match : HECT (HMM E-Value=0) 39 0.002
SB_5238| Best HMM Match : HECT (HMM E-Value=0) 38 0.003
SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.013
SB_51591| Best HMM Match : HECT (HMM E-Value=0) 36 0.017
SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07) 36 0.023
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.030
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.039
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 33 0.16
SB_19247| Best HMM Match : HECT (HMM E-Value=5.3) 32 0.28
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8) 32 0.28
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_22229| Best HMM Match : Arm (HMM E-Value=0) 29 1.5
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 28 3.4
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 28 4.5
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_9642| Best HMM Match : PSI (HMM E-Value=3.6) 27 6.0
SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08) 27 7.9
>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
Length = 454
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 256 LDPDEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASE 369
L D YLPSVMTCVNYLKLPDY+S E+M KLR AA E
Sbjct: 290 LSADNYLPSVMTCVNYLKLPDYTSKEIMLDKLRTAAHE 327
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 200 GFKALTPPLTVVRKSLE 250
GF++L PPLT+VRK+ E
Sbjct: 271 GFRSLNPPLTIVRKTFE 287
>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
Length = 749
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 32 QRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKA 211
Q +D L + D G +S IR +I+ S++ E++R L F TGS R+P GG
Sbjct: 637 QDFDFDALEKATEYDGGLTKDSALIRWFWEIVHSFDMEQKRQLLMFTTGSDRIPVGGLAK 696
Query: 212 L 214
L
Sbjct: 697 L 697
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQ 375
LP+ TC N L LPDY++ E + +L A + +
Sbjct: 711 LPTAHTCFNVLLLPDYATKEKLEERLLKAITHAK 744
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 122 ILASYNREEQRHFLQFVTGSPRLPTGGFKALTPPLTV 232
I++S +EE LQFVTGS +LP GGF L+P L +
Sbjct: 836 IVSSLTQEELARLLQFVTGSSQLPPGGFAELSPQLQI 872
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 77 HGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
H YN S I+ L S+++ + FLQFVTG+ ++P GF AL
Sbjct: 2396 HQYNENSLQIQWFWRALRSFDQAARAKFLQFVTGTSKVPLQGFAAL 2441
>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
++ LPS TC+N LKLP+Y + E+M +L A G F LS
Sbjct: 487 EDRLPSASTCMNMLKLPEYPTDEMMRERLLYAVESGA-GFELS 528
>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
Length = 1003
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 74 DHGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALT 217
D GY+A+ I+M ++ +++ L FVTGS R+P G LT
Sbjct: 905 DDGYSAQHSTIKMFWNVFNEMTNHQKKALLMFVTGSDRVPLKGLSNLT 952
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSFHLS 393
LP+ MTC N L LP+Y+S + + +L + A E F L+
Sbjct: 965 LPTAMTCFNRLLLPEYTSPKRLKERL-IVAIENSKGFGLT 1003
>SB_5238| Best HMM Match : HECT (HMM E-Value=0)
Length = 212
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 83 YNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
Y S+ + + +Y+ E++ LQFVTG+ RLP GGF L
Sbjct: 111 YTRNSKQVMWFWQAVKAYDNEKRIRLLQFVTGTCRLPVGGFTEL 154
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLAASE 369
+ +LP TC N L LP Y S E + KL A E
Sbjct: 171 ETWLPRSHTCFNRLDLPPYKSYEQLVEKLTFAIEE 205
>SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 262 PDEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLA 360
PD YLP TC LK+P YSS ++ KL+ A
Sbjct: 8 PDHYLPESYTCFFLLKMPRYSSHRILCEKLKYA 40
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 262 PDEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLA 360
PD YLP TC LK+P YSS ++ KL+ A
Sbjct: 3529 PDHYLPESYTCFFLLKMPRYSSHRILCEKLKYA 3561
>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 80 GYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
GY+ IR D + ++N + ++ L F TGS R+P GG
Sbjct: 187 GYSKNDNTIRYFWDTVMNFNTDLKKKMLLFATGSDRIPIGG 227
>SB_51591| Best HMM Match : HECT (HMM E-Value=0)
Length = 694
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 80 GYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
G I L +AS EE+ L+F TGSP +P GGF AL
Sbjct: 591 GCKESDEIITWLWKTIASLKEEEKALLLKFSTGSPCVPIGGFAAL 635
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAASEGQHSF 384
+P TC N LKL +Y S + + KL +A G F
Sbjct: 655 IPEASTCFNLLKLTNYESEKQLREKLLIAIRHGSEGF 691
>SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07)
Length = 279
Score = 35.5 bits (78), Expect = 0.023
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 77 HGYNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
H YN S I+ L S+++ + FLQFVTG+ ++P GF AL
Sbjct: 156 HKYNENS--IQWFWRALRSFDQAARAKFLQFVTGTSKVPLQGFAAL 199
>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 131 SYNREEQRHFLQFVTGSPRLPTGGFKAL 214
+Y+ E++ LQFVTG+ RLP GGF L
Sbjct: 62 AYDNEKRIRLLQFVTGTCRLPVGGFTEL 89
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 34.7 bits (76), Expect = 0.039
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +1
Query: 241 IAGVLLDPDEY------LPSVMTCVNYLKLPDYSSAEVMXAKLRLA 360
+ G+ L PD+ LP+ TC L+LP YSS E M +LR A
Sbjct: 2094 LVGIPLTPDDIEEGVDSLPTAQTCFFQLRLPPYSSQEAMANRLRYA 2139
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMXAKLRLA 360
D LP+ TC++ L +P YSS ++ +KL LA
Sbjct: 1978 DHQLPTANTCISRLYMPLYSSRAILKSKLLLA 2009
>SB_19247| Best HMM Match : HECT (HMM E-Value=5.3)
Length = 158
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMXAKLRLAA 363
LP TC + L LP YSSA+V K+R A+
Sbjct: 114 LPEAATCSSTLFLPKYSSAKVAEEKIRYAS 143
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 98 RAIRMLIDILASYNREEQRHFLQFVTGSPRLP 193
R I+ L + L ++ E++ FL+FVTG RLP
Sbjct: 38 RRIKDLWNALENFTNEDRSRFLRFVTGRRRLP 69
>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
Length = 498
Score = 31.9 bits (69), Expect = 0.28
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 225 SGGVNA-LNPPVGSLGLPVTNCKKCRCSSRLYEAKISISMRIARDSALYP*SGRIHSASI 49
SGG + L PP S ++CK ++ ++ K ++ RI+ + P S HSAS+
Sbjct: 91 SGGSDVILYPPKSSATFTSSSCKPPESETQEFQEKNALEARISGEGT--PISMSNHSASL 148
Query: 48 RGSHRWSR--PPEGLPRN 1
S S PP G+P N
Sbjct: 149 SSSTASSSSFPPCGVPSN 166
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 83 YNAESRAIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
Y+ + I+ + S++ E + LQFVTG+ R+P GF L
Sbjct: 467 YHDKHIVIQWFWKAVNSFDIETRARLLQFVTGTSRVPMNGFSEL 510
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 283 VMTCVNYLKLPDYSSAEVMXAKLRLA 360
V TC+ +KLP YS+ E+M +KL A
Sbjct: 3372 VETCMFMIKLPPYSTQEIMTSKLLYA 3397
>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
Length = 1050
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 101 PAILHCIHDPDEYI 60
PA+L+C+ DPDEY+
Sbjct: 252 PAVLNCLKDPDEYV 265
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 3 YAEVLQVDVTNDG---IHVCWRNVFVRIMDTMQNRGLYACLLIFWLRTTVKNNDTSYSLL 173
+ +L +T G + + N ++R+ + QN ++A + L + V +SYS
Sbjct: 1078 FVRILNSSITKSGERAVKLDGSNRYMRVDLSAQN-SVFAYNKLGCLYSFVSYYHSSYSAR 1136
Query: 174 LEVQGCQLVDSRH 212
+E CQ++ +RH
Sbjct: 1137 VEFASCQIIQNRH 1149
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 198 PVGSLGLPVTNCKKCRCSSRLYEAKISISMRIARD 94
P+G G P T C+KC CS + I R+ D
Sbjct: 795 PMGKRGAPTT-CQKCNCSGNIDPNAIGSCDRLTGD 828
>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 17 SGGRDQRWDPRMLAECIRPDHGYNAESRAIRMLIDILASYNREEQR 154
SG + W + P +GY+ ES + +++LAS ++++
Sbjct: 20 SGEQVPEWTREDILNYTEPKYGYSKESPGFQRFVNVLASMEGDDRK 65
>SB_9642| Best HMM Match : PSI (HMM E-Value=3.6)
Length = 165
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 164 VRSVVVLHGCTKPKYQ*ACV*PAILHCI 81
V V+ G T P + C+ PA+LHC+
Sbjct: 81 VAQVIRQSGTTGPTFNQRCLQPALLHCL 108
>SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)
Length = 677
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 83 IHDPDEYIPPAYVDPIVGHVHLKDFRV 3
+ D DE +PPA +P+ G HL +V
Sbjct: 121 LKDDDEPLPPAIPEPMDGPTHLNSSQV 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,589
Number of Sequences: 59808
Number of extensions: 310934
Number of successful extensions: 796
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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