Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1558X
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.32 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   3.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   5.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 65  IRPDHGYNAESRAIRMLIDILASYNR 142
           + P  G +A S A R+  D+L++YNR
Sbjct: 9   VAPFPGASANSEAKRLYDDLLSNYNR 34


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 475 ISLTAFTRGYKGGDICNHSKRG 410
           IS+    RGY  GD  N   RG
Sbjct: 315 ISVKELRRGYVAGDSKNQPPRG 336


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 475 ISLTAFTRGYKGGDICNHSKRG 410
           IS+    RGY  GD  N   RG
Sbjct: 26  ISVKELRRGYVAGDSKNQPPRG 47


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 VVRKSLESYWIRMNI 274
           VVR+ LE  WI ++I
Sbjct: 59  VVRRKLEENWIHVDI 73


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 475 ISLTAFTRGYKGGDICNHSKRG 410
           +S+    RGY  GD  N+  +G
Sbjct: 315 VSVKELRRGYVAGDSKNNPPKG 336


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 163 TVCYWKSKAANW 198
           T CY++  AA W
Sbjct: 537 TFCYFRRNAATW 548


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 67  SSGSWIQCRIAG 102
           SSG+W+ C   G
Sbjct: 45  SSGAWLDCTATG 56


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 67  SSGSWIQCRIAG 102
           SSG+W+ C   G
Sbjct: 45  SSGAWLDCTATG 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 219 GVNALNPPVGSLGLPVT 169
           G   L+PP  S  LP T
Sbjct: 90  GSRPLHPPASSTSLPAT 106


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 110 MLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALTP 220
           +L+     ++ ++ R + Q  TGS   P+  +  +TP
Sbjct: 105 LLVGYPPFWDEDQHRLYAQIKTGSYDYPSPEWDTVTP 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,952
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)