BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1558X (478 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.32 X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 3.9 EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 22 3.9 AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein. 21 5.1 AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 9.0 AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 9.0 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.0 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.0 AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 9.0 AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 21 9.0 >DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine receptor alpha1subunit protein. Length = 601 Score = 25.4 bits (53), Expect = 0.32 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 65 IRPDHGYNAESRAIRMLIDILASYNR 142 + P G +A S A R+ D+L++YNR Sbjct: 9 VAPFPGASANSEAKRLYDDLLSNYNR 34 >X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha protein. Length = 461 Score = 21.8 bits (44), Expect = 3.9 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -1 Query: 475 ISLTAFTRGYKGGDICNHSKRG 410 IS+ RGY GD N RG Sbjct: 315 ISVKELRRGYVAGDSKNQPPRG 336 >EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-alpha protein. Length = 119 Score = 21.8 bits (44), Expect = 3.9 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -1 Query: 475 ISLTAFTRGYKGGDICNHSKRG 410 IS+ RGY GD N RG Sbjct: 26 ISVKELRRGYVAGDSKNQPPRG 47 >AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein. Length = 88 Score = 21.4 bits (43), Expect = 5.1 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +2 Query: 230 VVRKSLESYWIRMNI 274 VVR+ LE WI ++I Sbjct: 59 VVRRKLEENWIHVDI 73 >AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha F2 protein. Length = 461 Score = 20.6 bits (41), Expect = 9.0 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -1 Query: 475 ISLTAFTRGYKGGDICNHSKRG 410 +S+ RGY GD N+ +G Sbjct: 315 VSVKELRRGYVAGDSKNNPPKG 336 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 20.6 bits (41), Expect = 9.0 Identities = 6/12 (50%), Positives = 8/12 (66%) Frame = +1 Query: 163 TVCYWKSKAANW 198 T CY++ AA W Sbjct: 537 TFCYFRRNAATW 548 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 20.6 bits (41), Expect = 9.0 Identities = 6/12 (50%), Positives = 8/12 (66%) Frame = +1 Query: 67 SSGSWIQCRIAG 102 SSG+W+ C G Sbjct: 45 SSGAWLDCTATG 56 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 20.6 bits (41), Expect = 9.0 Identities = 6/12 (50%), Positives = 8/12 (66%) Frame = +1 Query: 67 SSGSWIQCRIAG 102 SSG+W+ C G Sbjct: 45 SSGAWLDCTATG 56 >AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. Length = 1598 Score = 20.6 bits (41), Expect = 9.0 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = -2 Query: 219 GVNALNPPVGSLGLPVT 169 G L+PP S LP T Sbjct: 90 GSRPLHPPASSTSLPAT 106 >AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II protein. Length = 190 Score = 20.6 bits (41), Expect = 9.0 Identities = 9/37 (24%), Positives = 19/37 (51%) Frame = +2 Query: 110 MLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALTP 220 +L+ ++ ++ R + Q TGS P+ + +TP Sbjct: 105 LLVGYPPFWDEDQHRLYAQIKTGSYDYPSPEWDTVTP 141 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 138,952 Number of Sequences: 438 Number of extensions: 2963 Number of successful extensions: 10 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 12928545 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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