Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1556X
         (384 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.049
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   1.1  
UniRef50_Q9FK55 Cluster: Emb|CAB87627.1; n=1; Arabidopsis thalia...    33   2.5  
UniRef50_Q4DMM7 Cluster: Putative uncharacterized protein; n=3; ...    31   7.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.3 bits (85), Expect = 0.049
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 333 NRYIVPGAYF---SNLCDDVMQCQNIQILNTKCHYLFFLLLIWADELIAHLV*SGYW 172
           NR  V G  F   +N  ++   C  I     +     FLLL W DEL AHLV SGYW
Sbjct: 117 NRPRVAGIAFRLPANRYEEKTVCSQINANPKRFCLSRFLLLRWVDELTAHLVLSGYW 173


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -3

Query: 43  AGWWYLPVRTHKRS 2
           A WWYLP RTHKRS
Sbjct: 569 AEWWYLPARTHKRS 582


>UniRef50_Q9FK55 Cluster: Emb|CAB87627.1; n=1; Arabidopsis
           thaliana|Rep: Emb|CAB87627.1 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 76

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 FYLKVGGAFMLWMSMGSSNHF-IPDELSARPPI*AVKKRDNGIWY*VFV 266
           F+  V   +  W ++ SS  F  PDEL+ +  +   KK +NG W  VFV
Sbjct: 10  FFSAVLAGYFAWKTVSSSPEFDSPDELNEKQELNLKKKMENGFW--VFV 56


>UniRef50_Q4DMM7 Cluster: Putative uncharacterized protein; n=3;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 2798

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 115 LRTSISRWVVHLCCGCLWAPVTTLYQMSYQLVRP 216
           LR +++ WV+   CGC  A   TL ++SY ++ P
Sbjct: 19  LRAAVTFWVLFSLCGCTLAATRTL-EISYDMLTP 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,902,360
Number of Sequences: 1657284
Number of extensions: 7195710
Number of successful extensions: 15970
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15967
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)