Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1556X
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   1.8  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   5.4  
SPBC216.06c |swi1||replication fork protection complex subunit S...    24   7.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    24   9.4  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +2

Query: 44  LFLPCSSNAFRFEARGSRC------NYTETLELLSQGGW 142
           + LP S   FR++ R S C      NY + + L ++G W
Sbjct: 250 IHLPASKYQFRYQNRVSNCQIEAWINYKDLISLPAEGQW 288


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 147 FMLWMSMGSSNHFIPD 194
           F  WMS  S NHF P+
Sbjct: 341 FATWMSWFSCNHFYPE 356


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 314 ELISQTYATTLCSAKTYKYLIPNAIISFFY 225
           +L+    + TLCS++ Y+ +  N + + FY
Sbjct: 441 QLLFTLRSMTLCSSEIYQRIADNLLSNIFY 470


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 261 ILNTKCHYLFFLLLIWADELIA 196
           +L T    LFF  L+WA +L+A
Sbjct: 642 VLLTASRILFFRNLVWAKDLMA 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,935
Number of Sequences: 5004
Number of extensions: 30131
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)