Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1556X
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   1.7  
10_01_0026 - 351737-353443                                             27   5.1  
05_06_0064 + 25297268-25297612,25298150-25298237,25299608-252997...    27   6.7  
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    27   6.7  
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379...    27   6.7  
11_06_0715 + 26552962-26553510,26553578-26555746                       26   8.9  
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258           26   8.9  

>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 344 ASSTIGT*YPELISQTYATTLCSAKTYKY 258
           A  TIG   PE+IS+++ T  C A  Y +
Sbjct: 509 ARGTIGYIAPEMISRSFGTISCKADVYSF 537


>10_01_0026 - 351737-353443
          Length = 568

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 120 NFYLKVGGAFMLWMSMGSSNHFIP 191
           N Y   GG   +W   GSSN+ IP
Sbjct: 149 NVYYATGGLPPMWQQHGSSNYSIP 172


>05_06_0064 +
           25297268-25297612,25298150-25298237,25299608-25299719,
           25300417-25300972
          Length = 366

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 115 LRTSISRWVVHLCCGCL--WAPVTTLYQMSYQLVRP 216
           LR    RW  HL C CL     VT     ++QLV P
Sbjct: 276 LRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAP 311


>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 290 TTLCSAKTYKYLIPNAIISFFYCLYGRTS**LIWY 186
           T    +K    ++ N I  FF+C+YG+    L++Y
Sbjct: 459 TAYLKSKFRDTMVGNMIFWFFFCIYGQPMCLLLYY 493


>04_04_0648 -
           26936123-26936447,26936540-26936841,26937043-26937915,
           26937995-26938108,26938285-26938612,26938719-26938843,
           26938926-26938991,26939099-26939166,26939262-26939343,
           26939433-26939546,26939647-26939747,26940429-26940678
          Length = 915

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 32  PPPRLFLPCSSNAFRFEARGSRCNYTETLELLSQGG 139
           PP R F+  +      + RGS  NY    E LS+ G
Sbjct: 623 PPNRSFIDFAGRPQNCQRRGSALNYDAESETLSRAG 658


>11_06_0715 + 26552962-26553510,26553578-26555746
          Length = 905

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 321 VPGAYFSNLCDDVMQCQNIQILN 253
           V G YF +LC+ + Q + + +LN
Sbjct: 702 VKGRYFEDLCESLCQMEYLSLLN 724


>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
          Length = 522

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -2

Query: 353 ANKASSTIGT*YPELISQTYATTLCSAKTYKYLIPNAII----SFFYCLYGRTS**LIWY 186
           A K  S  G     L+ +  AT  C +   K +  + I+    +FF+  +  TS  L W 
Sbjct: 278 AAKEDSGHGNDLLGLMLEANATDACGSGGEKSMTMDEIVDECKTFFFAGHDTTSHLLTWA 337

Query: 185 KVVTGAHRHPQHKCTTHLEIEVLR 114
             + G H   QH+    L  EVLR
Sbjct: 338 MFLLGTHPEWQHR----LREEVLR 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,858
Number of Sequences: 37544
Number of extensions: 208268
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)