Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1556X
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22)                   28   3.0  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_36150| Best HMM Match : DUF594 (HMM E-Value=5.5)                    27   6.9  
SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1)                    26   9.2  
SB_41163| Best HMM Match : Peptidase_M48 (HMM E-Value=0.00095)         26   9.2  
SB_32979| Best HMM Match : Peptidase_M48 (HMM E-Value=3.8)             26   9.2  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22)
          Length = 410

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 167 HRHPQHKCTTHLEIEVLRSQYSYNGCPALQTETHYCYTAEIGGVVV 30
           HR  QH+C   L + VL    ++N    + T TH+ Y A++  + V
Sbjct: 26  HRPSQHRCIARLPLFVL----NFND---INTSTHFIYAADMKKITV 64


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 298 PMRRRYAVPKHTNT*YQMPLSLFFTAYMGG 209
           P   RY  P+  NT   MP S F+T+Y GG
Sbjct: 871 PRPWRYQSPRDLNT---MPYSGFYTSYSGG 897


>SB_36150| Best HMM Match : DUF594 (HMM E-Value=5.5)
          Length = 115

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 188 YKVVTGAHRH-PQHKCTTHLEIEVLRSQYSYNGCPALQTET 69
           Y +V+ A  H PQ K +  +    + +   YNGC  ++T+T
Sbjct: 53  YCIVSNADSHSPQFKKSLLISTMGIEALQIYNGCDPVETDT 93


>SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1)
          Length = 125

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 188 YKVVTGAHRH-PQHKCTTHLEIEVLRSQYSYNGCPALQTET 69
           Y VV+ A  H PQ K +  +    + +   YNGC   +T+T
Sbjct: 53  YCVVSNADSHSPQFKKSLLISTMGIEALQIYNGCDPAETDT 93


>SB_41163| Best HMM Match : Peptidase_M48 (HMM E-Value=0.00095)
          Length = 225

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 217 MGGRADSSSGIKWLLEPIDIHNINA 143
           M  R++   GIKW +  +D  ++NA
Sbjct: 105 MANRSEEIDGIKWQVNVVDTDDVNA 129


>SB_32979| Best HMM Match : Peptidase_M48 (HMM E-Value=3.8)
          Length = 65

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 217 MGGRADSSSGIKWLLEPIDIHNINA 143
           M  R++   GIKW +  +D  ++NA
Sbjct: 1   MANRSEEIDGIKWQVNVVDTDDVNA 25


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 267  IQILNTKCHYLFFLLLIWADEL 202
            +++ + + H LF ++L+W DEL
Sbjct: 4931 VKVTSEQYHKLFVVILVWLDEL 4952


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,163
Number of Sequences: 59808
Number of extensions: 242531
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)