Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1556X
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18150.1 68418.m02131 expressed protein similar to unknown pr...    33   0.086
At5g47740.1 68418.m05898 expressed protein                             28   1.9  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    27   5.7  
At3g61340.1 68416.m06864 F-box family protein contains F-box dom...    26   7.5  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    26   7.5  
At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containi...    26   9.9  
At1g01880.1 68414.m00106 DNA repair protein, putative similar to...    26   9.9  

>At5g18150.1 68418.m02131 expressed protein similar to unknown
           protein (emb|CAB87627.1)
          Length = 76

 Score = 32.7 bits (71), Expect = 0.086
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 FYLKVGGAFMLWMSMGSSNHF-IPDELSARPPI*AVKKRDNGIWY*VFV 266
           F+  V   +  W ++ SS  F  PDEL+ +  +   KK +NG W  VFV
Sbjct: 10  FFSAVLAGYFAWKTVSSSPEFDSPDELNEKQELNLKKKMENGFW--VFV 56


>At5g47740.1 68418.m05898 expressed protein 
          Length = 174

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 368 VGKKDANKASSTIGT*YPELISQTYATTLCSAK 270
           + K +A KAS+  G   PELI ++ A  +C  K
Sbjct: 92  IDKSNARKASTMKGNSVPELIMRSSAADVCEVK 124


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -2

Query: 170 AHRHPQHKCTTHLEIEVLRSQYSYNGCPALQTETHYCYTAEIG 42
           A RH + K   H ++++   +  +  CP    +  Y  +A++G
Sbjct: 64  APRHKKKKYNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLG 106


>At3g61340.1 68416.m06864 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -2

Query: 257 LIPNAIISFFYCLYGRTS**LIWYKVVTGAHRHPQHKCTTHLE 129
           L PN I  FFY LY       I    + G      HK  T L+
Sbjct: 355 LSPNTISDFFYLLYYNPDRNTITIVKIKGMETFQSHKAYTFLD 397


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 238  SLFFTAYMGGRADSSSGIKW 179
            ++F   Y GG  DS SG KW
Sbjct: 1062 NIFLGRYSGGSIDSDSGRKW 1081


>At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containing
           protein contains six TIGRFAM TIGR00756:
           pentatricopeptide repeat domains;  contains five Pfam
           PF01535: PPR repeats
          Length = 520

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 112 DLRTSISRWVVHLCCGCL 165
           DL  SI   ++HL CGCL
Sbjct: 68  DLNISIKLLILHLKCGCL 85


>At1g01880.1 68414.m00106 DNA repair protein, putative similar to
           Swiss-Prot:P28706 DNA repair protein rad13
           [Schizosaccharomyces pombe]; similar to UV
           hypersensitive protein [Arabidopsis thaliana]
           gi|13649704|gb|AAK37472
          Length = 570

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 250 QMPLSLFFTAYMGGRADSSSGIKWLLEPIDIHNINAP 140
           +M L +  T Y+  +A +++G   L +  + H+IN P
Sbjct: 396 KMLLPMLSTIYLREKARNNTGYALLCDQYEFHSINEP 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,810
Number of Sequences: 28952
Number of extensions: 161203
Number of successful extensions: 358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)