Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1555
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F307C3 Cluster: UPI0000F307C3 related cluster; n...    36   1.3  
UniRef50_A4VE48 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_UPI0000F307C3 Cluster: UPI0000F307C3 related cluster; n=1;
           Bos taurus|Rep: UPI0000F307C3 UniRef100 entry - Bos
           Taurus
          Length = 422

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 114 LSHTHHRKHN*DFYCLFILKYFHIFVYTHTNIH 16
           L+HTHH  +   + C+++  Y +++VYTH  I+
Sbjct: 80  LTHTHHLLYIYIYICMYMCVYIYVYVYTHIYIY 112


>UniRef50_A4VE48 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 307

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 286 FL*YMNIYKF*VFIHKLNFLCRFSIFIIYVIKSHAHCSLSLL 411
           F  ++ + KF +F+H+  FLC F  F IY ++     +L +L
Sbjct: 180 FYFFLLLIKFIIFLHRYIFLCIFLFFCIYYLQDGLQDALKML 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,782,161
Number of Sequences: 1657284
Number of extensions: 8431425
Number of successful extensions: 19035
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18907
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)