Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1555
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55123| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-09)                 29   2.8  
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)                      28   6.6  
SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)         28   8.7  
SB_34531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_55123| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-09)
          Length = 315

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 501 ALILSLSIFTNLYLPLNFRSARSITLFVKLTHSSFRSL 614
           ALI+ L IF NL++  N + A SIT    L H    +L
Sbjct: 183 ALIILLIIFINLWIYANVKRACSITELQPLAHGRLNAL 220


>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 319 VFIHKLNFLCRFSIFIIYVIKSHAHCSLSLLQCDXQTIYLHCVLDIRNVIGY 474
           V+ + L  +C FS+F +Y       C+ S+L+    +++  C   +  V  Y
Sbjct: 41  VYGYSLLRVCAFSVFRVYTYSILRVCAYSVLRVCAYSVFRVCASSVFRVCAY 92


>SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)
          Length = 635

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +3

Query: 507 ILSLSIFTNL--YLPLN-FRS---ARSITL--FVKLTHSSFRSLIXSFTHSPVYSPS 653
           IL LS F +   Y P++ F S   + +I +  F+K +H +   +I +F H+P+++ S
Sbjct: 277 ILQLSFFVSCCKYPPIDSFESILKSNAIPMINFIKKSHQALTGIIQTFNHTPIHNAS 333


>SB_34531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 601 HSGHSXVHSLIHQFTHQVKRRSFYILAGSRGVNLC 705
           H G+S V++ ++ F  +  RR+F  + G R  N C
Sbjct: 287 HYGNSAVNAFVYAFRDREMRRTFARILGKRCGNRC 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,552
Number of Sequences: 59808
Number of extensions: 270147
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)