Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q969A4 Cluster: Complement component C3; n=2; Branchios...    40   0.060
UniRef50_A5PMH2 Cluster: Novel protein; n=3; Deuterostomia|Rep: ...    39   0.11 
UniRef50_Q4RUJ7 Cluster: Chromosome 1 SCAF14995, whole genome sh...    38   0.14 
UniRef50_Q4P2Z2 Cluster: Putative uncharacterized protein; n=1; ...    37   0.43 
UniRef50_Q8FN88 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_UPI00004D9550 Cluster: UPI00004D9550 related cluster; n...    35   1.7  
UniRef50_A3M7D9 Cluster: Putative calcium binding hemolysin prot...    33   6.9  
UniRef50_Q73JW2 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q969A4 Cluster: Complement component C3; n=2;
            Branchiostoma|Rep: Complement component C3 -
            Branchiostoma belcheri (Amphioxus)
          Length = 1732

 Score = 39.5 bits (88), Expect = 0.060
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 51   TVNPVVLDGANISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLAVETFFHARPGS 230
            T N  VL   +  ++  +CV+   +   ++ +++P    +Y   +PD A  TF+H   GS
Sbjct: 1505 TTNRAVLLYFDEITSEEICVSIRMKRVMLVGAVQPVPVSVYDYYQPDEACTTFYHPGQGS 1564

Query: 231  PLLRGITD 254
            PLL  + D
Sbjct: 1565 PLLATLCD 1572


>UniRef50_A5PMH2 Cluster: Novel protein; n=3; Deuterostomia|Rep:
           Novel protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 734

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 84  ISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLAVETFFHARPGSPLLRGITDTTS 263
           I S C  CV + A  ++++    P   K+Y    P      F++    SPL R + D T+
Sbjct: 502 IPSQCMTCVAFNAVREYIVGKTAPVPVKVYDYYEPAFEATRFYNVSESSPLARELCDGTT 561


>UniRef50_Q4RUJ7 Cluster: Chromosome 1 SCAF14995, whole genome shotgun
            sequence; n=1; Tetraodon nigroviridis|Rep: Chromosome 1
            SCAF14995, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1760

 Score = 38.3 bits (85), Expect = 0.14
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 84   ISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLAVETFFHARPGSPLLRGITD 254
            I S C  CV ++A  ++V+    P   KIY    P      F++    SPL R + D
Sbjct: 1619 IPSQCMTCVAFKAVREYVVGKTAPVPVKIYDYYEPAFEATRFYNVSENSPLARELCD 1675


>UniRef50_Q4P2Z2 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 608

 Score = 36.7 bits (81), Expect = 0.43
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -1

Query: 220 RAWKKVSTARSGLVDG*ILANAGRRLVITNLDLASYVTHTGHVE-LILAPSNTTGF 56
           +AWKK+S+   G VD  +L NAG  LV T++  A ++  T HVE ++  P N   F
Sbjct: 240 QAWKKISSLTGGRVD-IVLDNAGFELV-TDMIFADWLLTTPHVEQVVFHPKNMPWF 293


>UniRef50_Q8FN88 Cluster: Putative uncharacterized protein; n=1;
           Corynebacterium efficiens|Rep: Putative uncharacterized
           protein - Corynebacterium efficiens
          Length = 318

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 213 HARPGSPLLRGITDTTS*LGSIKLNWLV*KRTPTSIIFVSVDEFVVEIT 359
           H  PG P   G T T    G +  N L   RTPT +I+   D+F  ++T
Sbjct: 231 HLAPGDPGAIGATATGGIFGQLPSNSLETARTPTRMIYCLPDDFACDVT 279


>UniRef50_UPI00004D9550 Cluster: UPI00004D9550 related cluster; n=2;
            Xenopus tropicalis|Rep: UPI00004D9550 UniRef100 entry -
            Xenopus tropicalis
          Length = 1178

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 84   ISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLAVETFFHARPGSPL 236
            IS T P CV + A   FV+  ++PA   +Y    P+     F+H    S L
Sbjct: 1011 ISHTEPECVKFYAHQYFVVGLVQPASVTVYDYYTPENRCTKFYHVNESSAL 1061


>UniRef50_A3M7D9 Cluster: Putative calcium binding hemolysin
           protein; n=1; Acinetobacter baumannii ATCC 17978|Rep:
           Putative calcium binding hemolysin protein -
           Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
           755)
          Length = 594

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 6   IIRLESSLFSG---YELHTVNPVVLDGANISSTCPVCVTYEARSKFVITSLRPAFAKIYP 176
           I++L   L S    + +   + V +D A + +T  V V Y  R+    T+  P F  I+P
Sbjct: 373 IVKLTGYLASNNKNFSIQFADGVTIDRAQLDTT--VGVNYWVRALVATTNSNPDFKYIFP 430

Query: 177 STRPDLAVE 203
           ST PD  ++
Sbjct: 431 STAPDYLLD 439


>UniRef50_Q73JW2 Cluster: Putative uncharacterized protein; n=1;
           Treponema denticola|Rep: Putative uncharacterized
           protein - Treponema denticola
          Length = 582

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 21  SSLFSGYELHTVN-PVVLDGANISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLA 197
           +S F      +VN P+++ GA  S    V    E R +  + ++  AF+ +YP  RPD  
Sbjct: 201 NSCFGSLIEKSVNKPIIVIGAGPSLDSSVEFIKENRDRLFVLAVDAAFSGLYPEIRPDAV 260

Query: 198 V 200
           V
Sbjct: 261 V 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,386,157
Number of Sequences: 1657284
Number of extensions: 10541210
Number of successful extensions: 22828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22824
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)