Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.1  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    26   3.7  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   6.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   8.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 81  NISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLA 197
           ++  TCP+C+ YE +    + SL    A +   T+P+LA
Sbjct: 407 HVLDTCPLCLNYETQPLAPVISLSHR-AYVSLPTQPELA 444


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 478 RLNIYDQ*SNSDYTTKIHNFTRQAHNTDDPIIVPT 582
           R N   +   S YTTKI +F+ + H   +PI V T
Sbjct: 45  RFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHT 79


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 273 NQVMKSCRLFPSTAGFLDERGRRFRLLDRVL*MDRFW 163
           NQ+  S  +   T+G LD   R  + + R L M+RF+
Sbjct: 157 NQLEHSLEMLGDTSGHLDRSLRTLKTMARRLAMNRFF 193


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   IIRLESSLFSGYELHTVNPVVLDGANISSTCPVCVTYEARS 128
           +I    S  SG+ L TVN  V+   + ++T  V  +Y + S
Sbjct: 481 LIMYPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYSPS 521


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 403 FRNIGGFRFEMLFKFV 356
           FR IGG RFE L+K V
Sbjct: 725 FRGIGGGRFESLYKEV 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,591
Number of Sequences: 5004
Number of extensions: 44127
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)