Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379...    29   2.9  
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413     27   8.7  

>01_05_0768 +
           25036945-25037296,25037499-25037722,25037902-25037955,
           25038006-25038253,25038909-25039296,25039392-25039802,
           25039919-25040077,25040632-25040979
          Length = 727

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 29  ILWLRTAHGKPGRIGWS*YKFHVPCVRHIRSQIQIRD 139
           +L L   HG P       +K HVP +RH  S+I I D
Sbjct: 549 VLTLHPQHGVPNTFADKHWKLHVPGIRH--SEISISD 583


>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
          Length = 533

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 ASLKTNSNIDNICECGRICSRDYEFKKH 373
           A LKT     + C+CGR+ SR   F +H
Sbjct: 160 AHLKTCGTRGHTCDCGRVFSRVESFIEH 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,902
Number of Sequences: 37544
Number of extensions: 278910
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)