Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)                    34   0.10 
SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_9658| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)              27   8.9  
SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)           27   8.9  

>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1079

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +3

Query: 12   RLESSLFSGYELHTVNPVVLDGANISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPD 191
            ++E S+   YE+ +   VV     I +   +CV +     F + +++P   K+Y    PD
Sbjct: 992  KMEGSI-GKYEI-SERSVVFYINEIRNDRDLCVAFNVTRVFEVGTVQPVPVKVYDYYEPD 1049

Query: 192  LAVETFFHARPGSPLLRGI 248
             A  TF+ A   S L  GI
Sbjct: 1050 DACMTFYGANENSALRMGI 1068


>SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 63  VVLDGANISSTCPVCVTYEARSKFVITSLRPAFAKIYPSTRPDLAVETFFHARPGSPLL 239
           V+L GA  SS C   + Y+AR       L P + +++P   P + ++ F   R   P++
Sbjct: 58  VLLQGAEKSSQCQALLIYQAR---CWEHLLPNYKQLHPELHPRILIKIFTKPRLLIPIV 113


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 475 HRLNIYDQ*SNSDYTTKIHNFTRQAHNTDDPIIVPTLTYIKTST 606
           H LN Y Q  ++  T K+H +T+ AH T         T+ +T T
Sbjct: 108 HTLNTYTQ-QHAHSTRKLHTYTQHAHLTRHSTTRALHTHTQTRT 150


>SB_9658| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)
          Length = 277

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -2

Query: 375 KC-FLNS*SLLQIRPHSQILSMLEFVFKLANSVLSNQVMKSCRLFPSTAGF-LDERGRRF 202
           KC ++NS S+ + R   Q LS+ + +     S L+   +  C+LFPS+A + +  R R+ 
Sbjct: 75  KCLYMNSRSVAKKRSELQALSIGKDLIFCVESWLNPNYL-DCKLFPSSADYTIHRRDRQS 133

Query: 201 R 199
           R
Sbjct: 134 R 134


>SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)
          Length = 297

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 338 VHTHKYYRCWSSFLN*PIQFYRTKL 264
           V THK Y  +   LN P+Q YRTKL
Sbjct: 46  VRTHKLYMFYFIILNLPLQ-YRTKL 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,490,518
Number of Sequences: 59808
Number of extensions: 339499
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)