Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 345 QIRPHSQILSMLEFVFKLANSVLSNQVMKSCRLFPSTAGFL 223
           ++ P+S +   L       +S L      S  ++PSTAGFL
Sbjct: 272 RLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFL 312


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 567 WIV-SIVCLTCKIMNFCSV 514
           WI   ++C T  I+N C++
Sbjct: 101 WIAFDVMCSTASILNLCAI 119


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 567 WIV-SIVCLTCKIMNFCSV 514
           W+   ++C T  I+N C++
Sbjct: 112 WLTCDVLCCTASILNLCAI 130


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 567 WIV-SIVCLTCKIMNFCSV 514
           W+   ++C T  I+N C++
Sbjct: 112 WLTCDVLCCTASILNLCAI 130


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 567 WIV-SIVCLTCKIMNFCSV 514
           W+   ++C T  I+N C++
Sbjct: 112 WLTCDVLCCTASILNLCAI 130


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 407 WFQEYRWFPVRNAF*IRNL 351
           W  E+RW  + N    RNL
Sbjct: 378 WICEHRWRQIYNMVRFRNL 396


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 502 SNSDYTTKIHNFTRQAHNTDD 564
           S  DY + +H +TR    T D
Sbjct: 246 SKDDYESLVHLYTRDQSETYD 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,237
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)