Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1550X
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ...    27   7.3  
At3g20760.1 68416.m02626 hypothetical protein                          27   9.6  
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    27   9.6  
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ...    27   9.6  

>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 362

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 290 ASLKTNSNIDNICECGRICSRDYEFKKH 373
           A LKT  +  + C+CGR+ SR   F +H
Sbjct: 135 AHLKTCGSRGHSCDCGRVFSRVESFIEH 162


>At3g20760.1 68416.m02626 hypothetical protein
          Length = 373

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 78  ANISSTCPVCVTYEARSKFVITSLRP 155
           A+ SS  P  V  E RSK VI SLRP
Sbjct: 21  ADESSETPKIVKKEKRSKTVIASLRP 46


>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 ASLKTNSNIDNICECGRICSRDYEFKKH 373
           A LKT     + C+CGR+ SR   F +H
Sbjct: 162 AHLKTCGTRGHSCDCGRVFSRVESFIEH 189


>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 419

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 ASLKTNSNIDNICECGRICSRDYEFKKH 373
           A LKT     + C+CGR+ SR   F +H
Sbjct: 165 AHLKTCGTRGHSCDCGRVFSRVESFIEH 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,667
Number of Sequences: 28952
Number of extensions: 229401
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)