Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1548
         (795 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILV0 Cluster: Putative uncharacterized protein; n=9; ...    35   2.7  
UniRef50_Q17GD6 Cluster: Tartan; n=2; Aedes aegypti|Rep: Tartan ...    34   3.6  
UniRef50_A7RZD5 Cluster: Predicted protein; n=1; Nematostella ve...    34   4.7  
UniRef50_Q3E937 Cluster: Uncharacterized protein At5g26190.1; n=...    33   6.2  

>UniRef50_Q8ILV0 Cluster: Putative uncharacterized protein; n=9;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2770

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 779  FIFINFIQFIPANLTKRYRQKYYFNKSANQLQM---KIRTFGSGINEIELLDIHDN*KSQ 609
            F F+N   F P+ +  + R+KY  +KS   L +     RT+G G    E  + + N   +
Sbjct: 2610 FAFVNNEFFFPSYIINKIRKKYTIDKSVEALILTGAMSRTWGMGFQLFE-CEYNANINDE 2668

Query: 608  YS*YLRIRTYLSQNTRSRDR 549
            ++ Y +   Y  +N  SR +
Sbjct: 2669 FNLYKKKNKYKKKNVESRKK 2688


>UniRef50_Q17GD6 Cluster: Tartan; n=2; Aedes aegypti|Rep: Tartan -
           Aedes aegypti (Yellowfever mosquito)
          Length = 673

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 185 SKKSTKVQLTPENHLTDTHENMQTYVRHAKMIDRHYYEYYQGNST 51
           SK ST+   TP+   +D +EN+  Y++H + ++ H + Y+Q   T
Sbjct: 559 SKSSTQPLRTPDPEESDHYENID-YLQHQRALNHHSHPYHQNQHT 602


>UniRef50_A7RZD5 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 915

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
 Frame = -2

Query: 767 NFIQFIPANLTKRYRQKYYFNKSANQLQMKIRTFGSGINEIELLDIHDN*KSQYS*YLRI 588
           N+I+++P N    + + Y FN + N+++ +I    SG   +ELL +  N  S     L+ 
Sbjct: 234 NYIEYLPRNFCGMFPKLYDFNANMNKIK-RIPDM-SGCKSMELLKLVHNQISSIGSSLQG 291

Query: 587 RTYLSQNTRSRDRPYALCLNSF*A--SLQ*ICLNRNDIKYILDNS 459
              L   T   +R   +  N+F    SL+ + L +N IK+I  N+
Sbjct: 292 MARLKDLTLEGNRITEVNDNTFKGVKSLETLDLAKNQIKHISKNA 336


>UniRef50_Q3E937 Cluster: Uncharacterized protein At5g26190.1; n=1;
           Arabidopsis thaliana|Rep: Uncharacterized protein
           At5g26190.1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 556

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 546 VCTMP*FILGLSTVNLPKQKRHQIYFRQFSFFINSK 439
           +CT   FIL  +  NLP+ KRH+++   F+ + N K
Sbjct: 301 ICTHCDFILHETCANLPRTKRHELHKNHFTLYPNPK 336


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,470,422
Number of Sequences: 1657284
Number of extensions: 12160294
Number of successful extensions: 23357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23350
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)