Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1548
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    28   1.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 227  FDLTSTYSCGLQC*SLMFSRVVVNDILIIHLWNTANDYH 343
            FD+T   + G +   ++ +R+ ++   ++HLW +A+D H
Sbjct: 1086 FDMTDFNNSGSKLMHVLHARIFIS---VLHLWRSADDLH 1121


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 722 QKYYFNKSANQLQMKIRTFGSG 657
           Q +YF+K  N  Q++I+ FG+G
Sbjct: 316 QDFYFSKGYNSYQIEIQMFGNG 337


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 563 SYFDLGKFLFVSINCIVIFNYRVYLTIR 646
           S+FD  + LF+S N I     RVY T+R
Sbjct: 47  SFFDCEEELFLSANKIFYSKLRVYQTVR 74


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 134  CLLDDFLA*AGPLC--FSY*SADYKNFDETFKYFDLTSTYSCGLQ 262
            CLLD  L  A  +C   S    D  N+DE   YFDL +TY+  L+
Sbjct: 1033 CLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDL-NTYADSLR 1076


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 560 FSYFDLGKFLFVSINCIVIFNYRVYLTIRF 649
           +SY D   F+F+SI C  + +  +YL ++F
Sbjct: 287 WSYKDTLPFIFISILCGCLGSVLIYLNMKF 316


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 170 KVQLTPENHLTDTHENMQTYVRHAKMI 90
           ++QL P +H+ D  + ++  ++HAK+I
Sbjct: 91  RIQLIPCSHVDDLEKIVEVRLKHAKLI 117


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 17  THNFHSLFKNS*YYYLDNTRNNAYQS 94
           T+N  S F+NS Y  L+N +NN+ QS
Sbjct: 232 TNNRVSSFQNSQYSTLNNFQNNSNQS 257


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 603 LILTNKN-LPKSKYEKQRQTVCTMP*FILGLST 508
           L+LT+   LP++ Y+  R+TV T P   L  ST
Sbjct: 132 LLLTDGTILPEALYDYNRETVSTCPLSFLSYST 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,560
Number of Sequences: 5004
Number of extensions: 57783
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)