Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1548
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    32   0.60 
05_07_0350 - 29457444-29457871,29458786-29461456                       30   2.4  
04_04_0261 + 24007790-24009098,24009191-24011118                       28   7.4  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    28   9.8  

>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 767 NFIQFIPANLTKRYRQKYYFNKSANQLQMKIRTFGSGINEIE 642
           N ++F+  +L K  + K YF KS N LQM ++     +N  E
Sbjct: 420 NHLRFLHWDLHKNSQSKLYFRKSTNALQMLLKVAFEALNLTE 461


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 725 RQKYYFNKSANQLQMKIRTFGSGINEIELLDIHDN 621
           R   Y N S NQ    +  + S +N +E+LD++DN
Sbjct: 135 RHLRYLNLSNNQFNGTLHYYLSTMNSLEVLDVYDN 169


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 767 NFIQFIPANLTKRYRQKYYFNKSANQLQMKIRTFGSGINEIELLDIHDN 621
           N    IP NL  R    ++ N + N LQ  I       ++++ LD+  N
Sbjct: 679 NLFSSIPENLMSRLSSSFFLNLANNSLQGGIPPIICNASDLKFLDLSYN 727


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 197 NLPTSKKSTKVQLTPENHLTDTHENMQTYVRHAKMIDRHYYEYYQGNS 54
           ++P   K+T     P+ H+T  + ++  +   AK+ D    E  QGN+
Sbjct: 649 HVPEETKATAAISCPDQHVTQANASLSQHEFGAKVEDNTSLEQNQGNA 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,411
Number of Sequences: 37544
Number of extensions: 289285
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)