Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1548
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44247| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_23290| Best HMM Match : SRCR (HMM E-Value=0)                        30   2.5  
SB_54436| Best HMM Match : PH (HMM E-Value=0.18)                       30   2.5  
SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                29   4.3  
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)                     29   5.7  

>SB_44247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 161 LTPENHLTDTHENMQTYVRHAKMIDRHYYEYY 66
           LTPEN L D H N        K ++   Y YY
Sbjct: 10  LTPENDLADDHRNNPRLQNSRKPVNAQKYHYY 41


>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 478

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 758 QFIPANLTKRYRQKYYFNKSANQLQMKIRTFGSGINEIE 642
           +F+  ++  RYR  Y    S+ QL +K+R  G G N +E
Sbjct: 4   EFVTIDIKARYRPHYSLRSSSLQLAIKVRLIG-GNNRLE 41


>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
          Length = 940

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 182  KKSTKVQLTPENHLTDTHENMQTYVRHAKMIDRHYYEYY 66
            K  T   LTPEN L D H N      + K ++   Y +Y
Sbjct: 893  KGRTIAVLTPENDLADDHRNNPRLQNNRKPVNAQTYHHY 931


>SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 161 LTPENHLTDTHENMQTYVRHAKMIDRHYYEYY 66
           LTPEN L D H N      + K ++   Y +Y
Sbjct: 76  LTPENDLADDHRNNPRLQNNRKPVNAQTYHHY 107


>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 161 LTPENHLTDTHENMQTYVRHAKMIDRHYYEYY 66
           LTPEN L D H N      + K ++   Y +Y
Sbjct: 328 LTPENDLADDHRNNPRLQNNRKPVNAQTYHHY 359


>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 161 LTPENHLTDTHENMQTYVRHAKMIDRHYYEYY 66
           LTPEN L D H N        K ++   Y +Y
Sbjct: 756 LTPENDLADDHRNNPRLQNSGKPVNAQTYHHY 787


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,127
Number of Sequences: 59808
Number of extensions: 383968
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)