Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1548
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    25   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.5  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 788 STSFIFINFIQFIPANLTKRYRQ 720
           STSFI IN+  F+  N   R+R+
Sbjct: 13  STSFILINYFIFLYFNSLVRFRR 35


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 548 VCLCFSYFDLGKFLFVS 598
           VC+CF Y  L +F+ V+
Sbjct: 369 VCMCFIYASLLEFVCVN 385


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 548 VCLCFSYFDLGKFLFVS 598
           VC+CF Y  L +F+ V+
Sbjct: 338 VCMCFIYASLLEFVCVN 354


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 548 VCLCFSYFDLGKFLFVS 598
           VC+CF Y  L +F+ V+
Sbjct: 389 VCMCFIYASLLEFVCVN 405


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 548 VCLCFSYFDLGKFLFVS 598
           VC+CF Y  L +F+ V+
Sbjct: 338 VCMCFIYASLLEFVCVN 354


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 303 MSFTTTLLNIKDQHWRP 253
           M FTTTL  + D H+ P
Sbjct: 153 MRFTTTLACMMDLHYYP 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,534
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)