Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.7  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   3.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 254 ENCETCKXLEQHVESLQEDFKKHLNA 331
           ++C   +  EQ    L+ +F +HLN+
Sbjct: 382 DSCSNIQTGEQFARLLRHNFNRHLNS 407


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 254 ENCETCKXLEQHVESLQEDFKKHLNA 331
           ++C   +  EQ    L+ +F +HLN+
Sbjct: 389 DSCSNIQTGEQFARLLRHNFNRHLNS 414


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
          protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 48 FVNSFYSLVI*KNHL 4
          F  SFY+LVI K H+
Sbjct: 37 FFGSFYNLVIRKEHI 51


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 722 WQFSNMKSFSSVDTS*TCINASNIYLLFNVAPTL 621
           W+  ++  F S+  + TC    +  L+F V P L
Sbjct: 149 WKMPSLSEFLSLFGTETCPAIGSAILIFVVLPEL 182


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 722 WQFSNMKSFSSVDTS*TCINASNIYLLFNVAPTL 621
           W+  ++  F S+  + TC    +  L+F V P L
Sbjct: 149 WKMPSLSEFLSLFGTETCPAIGSAILIFVVLPEL 182


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 479 DSSQKSHRFHFHQPHHCIKVQHH 411
           +++  +   H H  HH I  QHH
Sbjct: 314 NAATNNQNHHHHAGHH-IHAQHH 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,212
Number of Sequences: 336
Number of extensions: 3301
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)