Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.18 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   6.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   6.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   6.8  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   9.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.0  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 553 GDWFVMFYGAACVECQRLHAVWESV 627
           G WF+ +Y  +C  C+RL  +W+++
Sbjct: 43  GTWFIKYYLPSCGACKRLGPMWDNM 67



 Score = 29.1 bits (62), Expect = 0.73
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLKSR 648
           WF+ FY + C +C  +   W ++   ++ +
Sbjct: 301 WFIQFYSSECDDCDDVSTAWYAMANRMRGK 330


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 515 NIYLL--ALLQLVFDSSQKSHRFHFHQ 441
           NIYLL    LQ  ++  ++SH FHF +
Sbjct: 19  NIYLLISGCLQYFYEVRKRSHYFHFRR 45


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = +2

Query: 263 ETCKXLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALLYSGEA 442
           E  K +EQ +ES ++ FKK +  +S+ + N+ LA   + + E A     +  +L+     
Sbjct: 591 EILKVIEQMLESNEQKFKKQI--VSLASENAKLAAQRDAAVENA----NYSRSLIQKKTT 644

Query: 443 DEN-----EIYGFFEKNQTPAVKELTDKYLSI*HKQLLVQQQE 556
           DE      E  G  E      ++E T  Y      Q L++Q E
Sbjct: 645 DETVGSLIEKVGKLEYEVQGTLEEATSYYQKNTELQQLLKQNE 687


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 140 YKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFI 30
           Y  Y+K  F F W K      + I     V L+ LFI
Sbjct: 213 YHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKLVGLFI 249


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 556 DWFVMFYGAACVECQRLHAVWESVGATLKS 645
           D  V FY   C  C+RL   +E++G   K+
Sbjct: 160 DVLVEFYADWCGYCKRLAPTYETLGKVFKN 189


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 341 KTVNSHLARLYNPSKEPALIFYRHGVALLYS 433
           +T +  + +  N ++ P L+  RHGVA  YS
Sbjct: 270 RTDDEKVIKTLNVTRLPHLVAIRHGVAFSYS 300


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 45  QTYFYKNTYKNIKAHKLLLPFEIKMNFV-IPFVSLLLWCNNV 167
           ++YF K+ +  +KA+ +L P     NF  +P V  +++ N V
Sbjct: 161 KSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,899
Number of Sequences: 5004
Number of extensions: 53253
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)