Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    31   1.0  
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    29   3.1  
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    29   4.1  
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992...    29   4.1  
08_02_0593 + 19078264-19078609,19078724-19082256                       28   9.4  
01_03_0146 + 13120727-13121037,13121063-13121912,13122854-131235...    28   9.4  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 413 GVALLYSGEADENEIYGFFEKNQTPAVKELTDKYLSI*H---KQLLVQQQEIGLSCFM 577
           G+ +  + E  +N+I   F K+  P+VK   DK++   H    Q+L+    + L+CF+
Sbjct: 218 GIEISSNFELGKNKILETFGKSAMPSVKFFGDKFIKGEHMTDDQILISFMLVSLNCFL 275


>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 518 SNIYLLALLQLVFDSSQKSHRFHFHQPHHCIKVQHH 411
           SN+    L Q      Q  H+  ++QPHH    QHH
Sbjct: 422 SNVQFAMLNQQQHQYYQSQHQQQYYQPHHFQDHQHH 457


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 651 NVARIDASLAGVNTAKRFHVGKLPAFLLFRLGKCTDM 761
           N+  ID +  GVN A   H+ K    L+ +LG C+ +
Sbjct: 460 NLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSI 496


>03_02_0621 -
           9923163-9923245,9924163-9924338,9924437-9924495,
           9924952-9924984,9925060-9925185
          Length = 158

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLK 642
           WFV F    C  C+ L  +WE +G  ++
Sbjct: 61  WFVKFCVPWCKHCKNLGTLWEDLGKVME 88


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 600  LAFNTSCPIKHDKPISCCCTSSCLC 526
            + FN++  I HDKP+   C  SC C
Sbjct: 1079 IPFNSNGAIVHDKPLIFECGPSCRC 1103


>01_03_0146 +
           13120727-13121037,13121063-13121912,13122854-13123561,
           13123596-13123943
          Length = 738

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -3

Query: 716 FSNMKSFSSVDTS*TCINASNIYLLFNVAPTLSQTACSLWHSTQAAP 576
           + + KS++S D    C++ ++I L ++VA  L +  CSL H++   P
Sbjct: 538 YGSRKSWASDDGD-GCVSTTDIILAWHVATRLYEMRCSL-HASSPTP 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,935
Number of Sequences: 37544
Number of extensions: 285494
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)