Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_54641| Best HMM Match : Cytochrom_B562 (HMM E-Value=5.4)            29   3.1  
SB_29667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 29   4.1  
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           29   5.5  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   7.2  
SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)                   28   7.2  
SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)                 28   9.5  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_13982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 679 AKLASMRATFICSLMLLQHFPKQHVA 602
           A+ +S RA F+C L+LLQ F   H A
Sbjct: 2   ARASSRRALFLCLLVLLQEFGPAHFA 27


>SB_54641| Best HMM Match : Cytochrom_B562 (HMM E-Value=5.4)
          Length = 235

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 679 AKLASMRATFICSLMLLQHFPKQHVA 602
           A+ +S RA F+C L+LLQ F   H A
Sbjct: 2   ARASSRRALFLCLLVLLQEFGPAHFA 27


>SB_29667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 679 AKLASMRATFICSLMLLQHFPKQHVA 602
           A+ +S RA F+C L+LLQ F   H A
Sbjct: 2   ARASSRRALFLCLLVLLQEFGPAHFA 27


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLKSR 648
           W V F+   C  CQRL   W      LK +
Sbjct: 100 WLVEFFAPWCGHCQRLAPEWAKAATELKGK 129


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 562 FVMFYGAACVECQRLHAVWESVGATLK 642
           FV FY   C+ C +L  +WE +    K
Sbjct: 110 FVKFYAPWCIHCIKLAPIWERLAEDFK 136


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 562 FVMFYGAACVECQRLHAVWESVGATLK 642
           FV FY   C  C++L  +W+ +G   K
Sbjct: 406 FVEFYAPWCGHCKQLAPIWDQLGEKYK 432


>SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)
          Length = 186

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 633 CSNTFPNSM*PLAFNTSCPIKHDKPISCCCTSSCLCQMLKYLSVSS 496
           CS+  PN +  +   TSC  + +K ++ CC+S  +  +L+  ++ S
Sbjct: 128 CSSDSPNYLECIQMCTSCDYRVEKKLA-CCSSQDVVNLLQCCNIKS 172


>SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)
          Length = 308

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 369 FTILQKNQHLYFIDMVLHF 425
           F ILQ+NQ   FID ++HF
Sbjct: 158 FDILQRNQSASFIDGIIHF 176


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 476 SSQKSHRFH--FHQPHHCIKVQHH 411
           SSQ SHR+H   H  HH +   HH
Sbjct: 106 SSQSSHRYHPLCHHHHHHLHHHHH 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,603
Number of Sequences: 59808
Number of extensions: 374921
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)