Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical ...    44   9e-05
U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    36   0.042
U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfi...    31   1.2  
U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfi...    31   1.2  
U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfi...    31   1.2  
AF250045-1|AAG17620.1|  246|Caenorhabditis elegans thioredoxin-l...    31   1.2  
AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy : short...    31   1.2  
AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    29   4.8  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK973.11 protein.
          Length = 447

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +1

Query: 553 GDWFVMFYGAACVECQRLHAVWESVGATL 639
           G WFV FY   C  C+RLH VW+ VG TL
Sbjct: 44  GMWFVEFYAPWCAHCKRLHPVWDQVGHTL 72


>U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical
           protein D2092.4 protein.
          Length = 363

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 CETCKXLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALLYSGE 439
           C TC      VE + +D +       VKT +  +AR    +  P+L++YR    +LY G+
Sbjct: 107 CPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLVYYRRKNPILYDGD 166

Query: 440 ADENE-IYGFFEKNQTPAVKELTD 508
             ++E +  +   ++  A  +LTD
Sbjct: 167 FKDSETLLRWLRAHEEVATWDLTD 190


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 599 KGYMLFGKVLEQH*RADKCCSH*CKFSWCQHC*KISCWKI 718
           K  +LF +++E++ +  +  S  C +SWC+HC K+  W +
Sbjct: 573 KSVVLFDEIVEKNEKKTQNRSCPCGYSWCRHCNKVPHWPL 612


>U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform b protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 344 TVNSHLARLYNPSKEPALIFYRHGVALLYSGEADENEIYGFFEKNQTPAVKELTD 508
           TV+  ++  +     P L  +R+G    Y+G  D + I  + +K   P  K L D
Sbjct: 84  TVHGEVSSKFEVRGYPTLKLFRNGKPQEYNGGRDHDSIIAWLKKKTGPVAKPLAD 138


>U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform c protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 344 TVNSHLARLYNPSKEPALIFYRHGVALLYSGEADENEIYGFFEKNQTPAVKELTD 508
           TV+  ++  +     P L  +R+G    Y+G  D + I  + +K   P  K L D
Sbjct: 84  TVHGEVSSKFEVRGYPTLKLFRNGKPQEYNGGRDHDSIIAWLKKKTGPVAKPLAD 138


>U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform a protein.
          Length = 493

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 344 TVNSHLARLYNPSKEPALIFYRHGVALLYSGEADENEIYGFFEKNQTPAVKELTD 508
           TV+  ++  +     P L  +R+G    Y+G  D + I  + +K   P  K L D
Sbjct: 84  TVHGEVSSKFEVRGYPTLKLFRNGKPQEYNGGRDHDSIIAWLKKKTGPVAKPLAD 138


>AF250045-1|AAG17620.1|  246|Caenorhabditis elegans thioredoxin-like
           protein DPY-11 protein.
          Length = 246

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 260 CETCKXLEQHVESL---QEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALLY 430
           C  CK L++   +     +D    +  + V TVN  L+  +  +  P +   + GV   Y
Sbjct: 51  CPACKDLQKAWNAFADWSDDLGIKVGEVDV-TVNPGLSGRFLVTALPTIYHVKDGVFRQY 109

Query: 431 SGEADENEIYGFFEKNQTPAVKELTD 508
           SG  D+N+   F E  +   +  + D
Sbjct: 110 SGARDKNDFISFVEDKKYRVIDPVPD 135


>AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 11 protein.
          Length = 246

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 260 CETCKXLEQHVESL---QEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALLY 430
           C  CK L++   +     +D    +  + V TVN  L+  +  +  P +   + GV   Y
Sbjct: 51  CPACKDLQKAWNAFADWSDDLGIKVGEVDV-TVNPGLSGRFLVTALPTIYHVKDGVFRQY 109

Query: 431 SGEADENEIYGFFEKNQTPAVKELTD 508
           SG  D+N+   F E  +   +  + D
Sbjct: 110 SGARDKNDFISFVEDKKYRVIDPVPD 135


>AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical
           protein F14F9.4 protein.
          Length = 918

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 599 KGYMLFGKVLEQH*RADKCCSH*CKFSWCQHC*KISCWKI 718
           K  + F +V+E + +  +  S  C +SWC+ C K+  W +
Sbjct: 640 KSAVFFDEVVEGNDKKTQNRSCPCGYSWCRQCNKVPHWPL 679


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 218 KRKRKAYCLIH*ENCETCKXLEQHVESLQEDFKKHLNAMSVKTVNSHLARL---YNPSKE 388
           K K    C+      E  + +  H+E L  + K+ +NAM++   +S LAR    +NP K 
Sbjct: 98  KEKLSLNCVHDSSINELMRGVRAHIEDLLAEHKEEMNAMNLAVAHS-LARYKVKFNPEKI 156

Query: 389 PALI 400
             +I
Sbjct: 157 DTMI 160


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +2

Query: 260 CETCKXLEQHVESLQEDFKKHLNAMSV----KTVNSHLARLYNPSKEPALIFYRHGVALL 427
           C  CK L    E   +  K   + + +     T+   L   Y  S  P +   R+G    
Sbjct: 176 CGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKYGVSGYPTMKIIRNGRRFD 235

Query: 428 YSGEADENEIYGFFEKNQTPAVKEL 502
           Y+G  +   I  +      PA K+L
Sbjct: 236 YNGPREAAGIIKYMTDQSKPAAKKL 260


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -2

Query: 636 CCSNTFPNSM*PLAFNTSCPIKHDKPISCC--CTSSCLCQ 523
           C +N  PN      F   CP+K    ++C   C   C C+
Sbjct: 163 CGTNEEPNQCHNACFEKKCPVKPQPLVNCMEKCDIGCSCK 202


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -2

Query: 636 CCSNTFPNSM*PLAFNTSCPIKHDKPISCC--CTSSCLCQ 523
           C +N  PN      F   CP+K    ++C   C   C C+
Sbjct: 163 CGTNEEPNQCHNACFEKKCPVKPQPLVNCMEKCDIGCSCK 202


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -2

Query: 636 CCSNTFPNSM*PLAFNTSCPIKHDKPISCC--CTSSCLCQ 523
           C +N  PN      F   CP+K    ++C   C   C C+
Sbjct: 163 CGTNEEPNQCHNACFEKKCPVKPQPLVNCMEKCDIGCSCK 202


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 206 FGTYKRKRKAYCLIH*ENCETCKXLE 283
           F TYK   +AY   H  NC TC  +E
Sbjct: 793 FCTYKSTGRAYVTQHWYNCYTCNMME 818


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,746
Number of Sequences: 27780
Number of extensions: 298105
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)