Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1545
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35620.1 68414.m04425 thioredoxin family protein similar to S...    31   0.85 
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    29   2.6  
At1g04980.1 68414.m00497 thioredoxin family protein similar to S...    29   2.6  
At1g07960.3 68414.m00867 thioredoxin family protein low similari...    29   3.4  
At1g07960.2 68414.m00866 thioredoxin family protein low similari...    29   3.4  
At1g07960.1 68414.m00865 thioredoxin family protein low similari...    29   3.4  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    28   6.0  

>At1g35620.1 68414.m04425 thioredoxin family protein similar to
           SP|Q43116 Protein disulfide isomerase precursor (PDI)
           (EC 5.3.4.1) {Ricinus communis}; contains Pfam profile
           PF00085: Thioredoxin
          Length = 440

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +2

Query: 260 CETCKXLEQHVESLQEDFKKHLNAMSVKTVN----SHLARLYNPSKEPALIFYRHGVALL 427
           C  CK L   +++      K    + +  +N    S LAR       P L+ Y HGV + 
Sbjct: 61  CGHCKRLNPELDAAAPILAKLKQPIVIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPME 120

Query: 428 YSGEADENEIYGFFEKNQTPAVKEL 502
           Y G    + +  + +K   P V  L
Sbjct: 121 YYGPRKADLLVRYLKKFVAPDVAVL 145


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 143 GYKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLL 42
           G K+   +  NF W KQ M  N FI +F  V LL
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLL 514


>At1g04980.1 68414.m00497 thioredoxin family protein similar to
           SP|Q63081 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Rattus norvegicus}; contains Pfam profile
           PF00085: Thioredoxin
          Length = 443

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 547 TTGDWFVMFYGAACVECQRLHAVWESVGATLK 642
           + G   V F+   C  CQ L   WE V +TLK
Sbjct: 45  SNGVVLVEFFAPWCGHCQSLTPTWEKVASTLK 76


>At1g07960.3 68414.m00867 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLK 642
           WFV F    C  C++L  +WE +G  ++
Sbjct: 46  WFVKFCVPWCKHCKKLGNLWEDLGKAME 73


>At1g07960.2 68414.m00866 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLK 642
           WFV F    C  C++L  +WE +G  ++
Sbjct: 46  WFVKFCVPWCKHCKKLGNLWEDLGKAME 73


>At1g07960.1 68414.m00865 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 559 WFVMFYGAACVECQRLHAVWESVGATLK 642
           WFV F    C  C++L  +WE +G  ++
Sbjct: 46  WFVKFCVPWCKHCKKLGNLWEDLGKAME 73


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 63  NTYKNIKAHKLLLPFEIKMNFVIPFVSLLL 152
           N  K+ K HKLL   E++ NFVI F    L
Sbjct: 365 NICKSTKVHKLLNCIEVECNFVICFTCATL 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,734
Number of Sequences: 28952
Number of extensions: 254642
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)