Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1543
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 155 7e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 152 5e-38
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 97 2e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 6e-12
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 27 2.5
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.8
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 7.7
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 7.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 155 bits (375), Expect = 7e-39
Identities = 65/84 (77%), Positives = 78/84 (92%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V
Sbjct: 59 GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV 118
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
D+IR++AD C+GLQGFLVFHSFG
Sbjct: 119 TDKIRRIADNCSGLQGFLVFHSFG 142
Score = 98.3 bits (234), Expect = 9e-22
Identities = 42/58 (72%), Positives = 53/58 (91%)
Frame = +2
Query: 509 GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTNLEHSDC 682
GGTGSGF +LL+ERL+++Y KKSKL+FS+YPAPQVST+VVEPYNS+LTTH L+ +DC
Sbjct: 143 GGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADC 200
Score = 93.1 bits (221), Expect = 3e-20
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGR 258
MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ 58
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 152 bits (368), Expect = 5e-38
Identities = 62/84 (73%), Positives = 78/84 (92%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D V
Sbjct: 63 GKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSV 122
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
L+RIR++AD C+GLQGFLVFHSFG
Sbjct: 123 LERIRRMADNCSGLQGFLVFHSFG 146
Score = 99 bits (238), Expect = 3e-22
Identities = 42/58 (72%), Positives = 53/58 (91%)
Frame = +2
Query: 509 GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTNLEHSDC 682
GGTGSG +LL+ERL+++YGKKS L+FS+YPAPQVST+VVEPYNS+LTTH L++SDC
Sbjct: 147 GGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDC 204
Score = 85.4 bits (202), Expect = 7e-18
Identities = 42/63 (66%), Positives = 47/63 (74%), Gaps = 5/63 (7%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 249
MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 250 TGR 258
TG+
Sbjct: 60 TGQ 62
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.5 bits (232), Expect = 2e-21
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +R+ A+ C LQGF + HS G
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLG 140
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + FS+ PAP+ S VVEPYN+ L+ H
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQ 191
Query: 662 NLEHSD 679
+E+SD
Sbjct: 192 LVENSD 197
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSE 249
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNE 53
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 65.7 bits (153), Expect = 6e-12
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 261 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDV 434
+++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHS 503
++D I + AD L+GF + HS
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHS 140
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ-VSTAVVEPYNSIL 649
GF + + GGTGSG S L+ERL+ Y KK +S++P Q VS VV+PYNS+L
Sbjct: 134 GFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLL 190
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +1
Query: 88 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSET 252
RE I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 131 LATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPGGKARATS 277
++TPA + S+ + + PS+ +TTP + SS + TS
Sbjct: 618 VSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETS 666
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 332 VSAGTNLVDYSWFQINKDSSWHVLSRP 252
+SAGT+ + + KD++WH ++RP
Sbjct: 386 LSAGTDQTTRLFARFKKDNAWHEMARP 412
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 562 VNGETLHQK*CESGAGSTPNE*NTRKP*SPVHWSASFLILSKTTSTISL 416
VN ++ +QK ES G++ N K +P+H + S LSK +ISL
Sbjct: 528 VNEDSANQKE-ESALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSISL 575
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 166 HGIQPDGQMPSDKTLGGGDDSFNTFFSETGRE--STCHELSLLIWNQL 303
H IQ D P K L G D + + RE S CH L+L+ W L
Sbjct: 71 HFIQHD--WPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHL 116
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 525 DSHHF*WSVSPLTTERSPSLSFPSILLHRCPQR 623
D HH+ S + T SP +P I++HR +R
Sbjct: 751 DWHHYALSFNHYTHFTSPIRRYPDIIVHRLLER 783
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 290 INKDSSWHVLSRPVSLK 240
+NK S WH L P+ LK
Sbjct: 566 LNKQSQWHDLENPIVLK 582
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Frame = -1
Query: 285 QRQLVARAFPPGLAEE----RVKGVV-----STAEGLI*RHLTIRLDSMLEAVQLPAGVA 133
+R +R FPPG+ E+ VKG++ T + LI R + L++ + +
Sbjct: 283 RRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 342
Query: 132 NLYAGLTDVN 103
N Y G ++ N
Sbjct: 343 NKYVGQSEEN 352
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 244 SETGRESTCHELSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRMLPITMPED 402
S+T T + L W++ ++ + L + S P S L + + T+PED
Sbjct: 2 SQTAPSDTEYNQRLERWSERLKSQTISHLPTDYSRPVPSRLVEAVFERTLPED 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,703
Number of Sequences: 5004
Number of extensions: 65560
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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