Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1543
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 167 5e-42
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 167 5e-42
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 167 5e-42
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 167 5e-42
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 167 8e-42
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 167 8e-42
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 159 2e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 105 2e-23
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 104 6e-23
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 103 8e-23
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 102 2e-22
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 102 2e-22
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 102 3e-22
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 100 1e-21
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 100 1e-21
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 98 4e-21
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 1e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4... 31 0.54
At2g40070.1 68415.m04923 expressed protein 31 0.71
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar... 30 1.6
At5g45120.1 68418.m05539 aspartyl protease family protein contai... 29 2.9
At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutamate--... 29 2.9
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa... 29 3.8
At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutamate--... 29 3.8
At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutamate--... 29 3.8
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 29 3.8
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 28 5.0
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 28 5.0
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 28 5.0
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 28 6.6
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 167 bits (407), Expect = 5e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDRIRKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRIRKLADNCTGLQGFLVFNAVG 142
Score = 126 bits (305), Expect = 1e-29
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETG 57
Score = 102 bits (245), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 167 bits (407), Expect = 5e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDRIRKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRIRKLADNCTGLQGFLVFNAVG 142
Score = 126 bits (305), Expect = 1e-29
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETG 57
Score = 102 bits (245), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 167 bits (407), Expect = 5e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDRIRKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRIRKLADNCTGLQGFLVFNAVG 142
Score = 128 bits (309), Expect = 3e-30
Identities = 52/57 (91%), Positives = 57/57 (100%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG 57
Score = 102 bits (245), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 167 bits (407), Expect = 5e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDRIRKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRIRKLADNCTGLQGFLVFNAVG 142
Score = 128 bits (309), Expect = 3e-30
Identities = 52/57 (91%), Positives = 57/57 (100%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG 57
Score = 102 bits (245), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 167 bits (405), Expect = 8e-42
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDR+RKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRVRKLADNCTGLQGFLVFNAVG 142
Score = 109 bits (263), Expect = 1e-24
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSETG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETG 57
Score = 104 bits (249), Expect = 6e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 167 bits (405), Expect = 8e-42
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDL 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
LDR+RKLAD CTGLQGFLVF++ G
Sbjct: 118 CLDRVRKLADNCTGLQGFLVFNAVG 142
Score = 109 bits (263), Expect = 1e-24
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETG 255
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSETG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETG 57
Score = 104 bits (249), Expect = 6e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 159 bits (386), Expect = 2e-39
Identities = 69/85 (81%), Positives = 81/85 (95%)
Frame = +3
Query: 255 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 434
+G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD
Sbjct: 58 SGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDT 117
Query: 435 VLDRIRKLADQCTGLQGFLVFHSFG 509
L+R+RKLAD CTGLQGFLVF++ G
Sbjct: 118 CLERLRKLADNCTGLQGFLVFNAVG 142
Score = 107 bits (257), Expect = 7e-24
Identities = 44/56 (78%), Positives = 50/56 (89%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSET 252
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSET
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSET 56
Score = 102 bits (245), Expect = 2e-22
Identities = 48/66 (72%), Positives = 57/66 (86%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + V GGTGSG SLL+ERLSVD+GKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+
Sbjct: 134 GFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193
Query: 662 NLEHSD 679
LEH+D
Sbjct: 194 LLEHTD 199
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 105 bits (253), Expect = 2e-23
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG+ WE+ C EHGI P G+ + L
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDL 42
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 104 bits (249), Expect = 6e-23
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLG 141
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 133 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 192
Query: 662 NLEHSD 679
+E++D
Sbjct: 193 LVENAD 198
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD 201
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 103 bits (248), Expect = 8e-23
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + + FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG+ WE+ LEHGI G+ D L
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL 42
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 102 bits (245), Expect = 2e-22
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG WE+ C EHGI G+ + L
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL 42
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 102 bits (245), Expect = 2e-22
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLG 141
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 133 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 192
Query: 662 NLEHSD 679
+E++D
Sbjct: 193 LVENAD 198
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSE 249
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNE 54
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 102 bits (244), Expect = 3e-22
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + + FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSE 249
MRE + + GQ G QIG WE+ C EHGI GQ D L + N +F+E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNE 53
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 100 bits (239), Expect = 1e-21
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG WE+ C EHGI P G+ D L
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL 42
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 100 bits (239), Expect = 1e-21
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ C LQGF V HS G
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLG 140
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + L FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG WE+ C EHGI P G+ D L
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL 42
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +3
Query: 258 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 437
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 438 LDRIRKLADQCTGLQGFLVFHSFG 509
LD +RK A+ LQGF V HS G
Sbjct: 117 LDVVRKEAENSDCLQGFQVCHSLG 140
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 661
GF + GGTGSG +LL+ ++ +Y + + FS++P+P+VS VVEPYN+ L+ H
Sbjct: 132 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQ 191
Query: 662 NLEHSD 679
+E++D
Sbjct: 192 LVENAD 197
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 210
MRE + + GQ G QIG WE+ C EHGI GQ D L
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL 42
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +3
Query: 264 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVV 437
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 438 LDRIRKLADQCTGLQGFLVFHS 503
+D I + AD L+GF++ HS
Sbjct: 119 MDMIDREADGSDSLEGFVLCHS 140
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTH 658
GF + GGTGSG S L+E L+ Y KK +S++P + S VV+PYNS+LT
Sbjct: 134 GFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLK 193
Query: 659 TNLEHSDC 682
++DC
Sbjct: 194 RLTLNADC 201
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 88 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFF 243
RE I++ +GQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +3
Query: 264 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVV 437
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 438 LDRIRKLADQCTGLQGFLVFHS 503
+D I + AD L+GF++ HS
Sbjct: 119 MDMIDREADGSDSLEGFVLCHS 140
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 482 GFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTH 658
GF + GGTGSG S L+E L+ Y KK +S++P + S VV+PYNS+LT
Sbjct: 134 GFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLK 193
Query: 659 TNLEHSDC 682
++DC
Sbjct: 194 RLTLNADC 201
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 88 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFF 243
RE I++ +GQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 961
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 624 TAVDTCGAG*MENSSLDFFP*STERRSIRSDVNPEPVPPRTSETRGNPEALCIGQPAS*S 445
TA G G + + L P ++S +P V P+ + T GN +CIG P+S +
Sbjct: 439 TATAASGKGTLRPAPLIISPDKYSKKSSGLICHPFEVEPKCT-TNGNGSFICIGDPSSST 497
Query: 444 C 442
C
Sbjct: 498 C 498
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = +2
Query: 89 GNASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPGGKAR 268
G +S T+ + R +TP T SS + R + + TP++RS++ +
Sbjct: 191 GRSSTLTANSKSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSRLT 250
Query: 269 ATSCLC*FGTNCSRRGSYRHLPSTVPPRA 355
T+ T S R PST A
Sbjct: 251 PTASKPTTSTARSAGSVTRSTPSTTTKSA 279
>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
RING finger rngB protein, cytosolic - Dictyostelium
discoideum, PIR:S68824; contains Pfam profiles PF01344:
Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
Length = 648
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -2
Query: 638 CKVPPP-LWTPVEQDRWKT 585
C +P P W PVEQ +WK+
Sbjct: 60 CSIPKPSAWNPVEQSKWKS 78
>At5g45120.1 68418.m05539 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 491
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 514 STPNE*NTRKP*SPVHWSASFLILSKTTSTISLP 413
+T N+ R+ +P S+SFL+L+ T S++SLP
Sbjct: 19 NTTNKTQARQHKNPSSSSSSFLVLTLTKSSVSLP 52
>At5g17920.1 68418.m02101
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase / vitamin-B12-independent methionine
synthase / cobalamin-independent methionine synthase
(CIMS) identical to SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana}
Length = 765
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 674 SARGWCGWSGSSCKVPPPLWTPVEQDRWKTQAWTSFRSQRRDAPSEVM 531
+A GW GS C PP ++ V + + T W++ P + M
Sbjct: 510 TANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGM 557
>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
lysosomal phospholipase A2 [Mus musculus] GI:18699602;
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 535
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 356 LLGVEQLTVSAGTNLVDYSWFQINKDSSWHVLSRPVSLKNVLKESSPPPRV 204
L +E T S N DY I+ +W ++ K VL + PP+V
Sbjct: 297 LESLEVFTKSLSNNTADYCGESIDLPFNWKIMEWAHKTKQVLASAKLPPKV 347
>At3g03780.2 68416.m00387
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 765
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 674 SARGWCGWSGSSCKVPPPLWTPVEQDRWKTQAWTSFRSQRRDAPSEVM 531
+A GW GS C PP ++ V + + T W+S P + M
Sbjct: 510 TANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMKGM 557
>At3g03780.1 68416.m00386
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 765
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 674 SARGWCGWSGSSCKVPPPLWTPVEQDRWKTQAWTSFRSQRRDAPSEVM 531
+A GW GS C PP ++ V + + T W+S P + M
Sbjct: 510 TANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMKGM 557
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 446 DQEAG*PMHRASGFPRVSLVRGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 625
D E+G ++ G R+ R G + L + +D+ + F P VS A
Sbjct: 250 DVESGVSESQSDGASRMIFDRHGRVDNGS--LERKPPIDFSSARGISFKFESNPSVSPAC 307
Query: 626 VEPYNS 643
V+PYNS
Sbjct: 308 VKPYNS 313
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 674 SARGWCGWSGSSCKVPPPLWTPVEQDRWKTQAWTSFRSQRRDAPSEVM 531
++ GW GS C PP ++ + + + T W+S + P + M
Sbjct: 558 TSNGWVQSYGSRCVKPPIIYGDITRPKAMTVFWSSMAQKMTQRPMKGM 605
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -2
Query: 638 CKVPPP-LWTPVEQDRWKT 585
C P P W PVEQ +WK+
Sbjct: 59 CNTPKPSAWRPVEQSKWKS 77
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -2
Query: 638 CKVPPP-LWTPVEQDRWKT 585
C P P W PVEQ +WK+
Sbjct: 59 CNTPKPSAWRPVEQSKWKS 77
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 561 STERRSIRSDVNPEPVPPRTSETRGNPEALCIGQP--AS*SCPKLR 430
S + +S R +V+ P PP+T ++ + L QP A S PK+R
Sbjct: 353 SKKNKSTRKNVDNVPSPPKTRSSKKTSDILTTTQPTIAESSEPKVR 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,227
Number of Sequences: 28952
Number of extensions: 385966
Number of successful extensions: 1318
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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