Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1542
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 29 0.69
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.8
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 3.7
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 3.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 4.9
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 26 4.9
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 6.4
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.69
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = +3
Query: 306 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD-PAHEE 482
I++P+L+ +I K++A+ NEL S PL AE+ ++G D ++
Sbjct: 48 IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKDWQERQK 100
Query: 483 LLTSLGIPEMTRFAHHSRLCRQN*NQ*KVLRLM*PTKYTSRRVTMSSTQNLRRTLSR 653
L P T F + N +L+ + RVT + T+N R+ R
Sbjct: 101 TLKGKESPFETIFGKERKEMESN-------KLLDSATHLQSRVTEADTKNDERSTLR 150
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 578 NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 682
+ ++ Y+K+G +EL + D V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 337 FESILRTGFFISNSVNSINKTLANIIDKINPLVYY 233
F+S GF ISN VN +K L +I IN + Y
Sbjct: 490 FQSASYPGFLISNDVN--HKILKYVIGAINNAIQY 522
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 602 KEGDYELDPKLKKDAVEVFDADFEKVN---FDNGAAAAGLINKW 724
K+G L+PK+ + V + +++EK++ FD+ GL++ +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSY 1320
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 355 IAEDKAFESILRTGFFISNSVNSINKTLANIIDKINPLVYYDSSI 221
+ +D ++ GF N++ T+ ++D NP V Y S+I
Sbjct: 593 VNDDVRRAAVCALGFICFKDPNALISTVELLVDSYNPHVRYGSAI 637
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 4.9
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -2
Query: 394 LSSSLQNFAENLVIAEDKAFESILRTGFFISNSVNSINKTLANII--DKINPLVYYDSSI 221
LS SL + L + + ++ L F + V I+ I P Y I
Sbjct: 201 LSKSLLHDISKLALRSKEYYDD-LDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLI 259
Query: 220 IFTSTEENKILSPPVPSKS*YLL 152
+ T E NK+ P + SK+ YLL
Sbjct: 260 LATGGEPNKLPIPGLDSKNVYLL 282
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 324 SMDSKALSSAITKFSAKFCNELDKKKNVVS 413
S DSK+L + F++K C E+DKK +++
Sbjct: 10 SCDSKSLG--VDDFTSKRCREIDKKALLIT 37
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 194 NSITTGTIEVVVPT 153
N T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 194 NSITTGTIEVVVPT 153
N T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 194 NSITTGTIEVVVPT 153
N T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,979
Number of Sequences: 5004
Number of extensions: 57089
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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