Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1542
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    31   1.3  
03_05_0294 + 22855503-22855946,22856346-22856399                       30   1.7  
01_01_1152 + 9170628-9171899                                           30   2.2  
01_06_0887 + 32733300-32734565                                         29   2.9  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    29   3.9  
11_02_0011 - 7337618-7338496,7338596-7338991                           28   6.7  
06_03_0452 + 20931484-20933872,20933950-20934074                       28   8.9  
02_04_0632 + 24614659-24615528,24615636-24616133                       28   8.9  

>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +3

Query: 297 LLEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA 473
           L+E+    LSM +K  SSA+  F+ KF + L           S+E     +  GT T PA
Sbjct: 237 LVEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPA 295

Query: 474 -HEELLTSLGIPEMTRFA 524
            H+ L++SLG   + R A
Sbjct: 296 LHQFLVSSLGEAALKRIA 313


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 402 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 506
           NV  SPLS    L+L+  G      ++L++ LG+P
Sbjct: 45  NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVP 79


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 399 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPEMTRFAHHSRLCR 545
           +N + SPLS    LAL+  G       ELL  LG P +    H S   R
Sbjct: 59  RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAEL-HRSPTTR 106


>01_06_0887 + 32733300-32734565
          Length = 421

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 572 TFNVANKIYIKEGDYELDPKLKK--DAVEVFDADFEKVNFDNGAAAAGLIN 718
           TFN+ N+I ++    EL P+ K     + ++ A      F +G   AGLIN
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLIN 173


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 399 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPEMTRFAH 527
           +NV  SPLS    L+L+  G      ++L ++LG P      H
Sbjct: 35  RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLH 77


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 387 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLG 500
           +   KN+V SP S    LAL+  G      +ELL  LG
Sbjct: 27  VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLG 64


>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -2

Query: 310 FISNSVNSINKTLANIIDKINPLVYYDSSIIFTSTEENKILSPPVPSKS*YLLITTNYYL 131
           ++  S N++  +L + ID+++P       +++ +   N  LS  +PS    L + TN YL
Sbjct: 131 YLDLSYNTLVNSLPSNIDRLSP------RLVYLNLASNS-LSGNIPSSIGQLKVLTNLYL 183

Query: 130 INDCHNYEYP 101
             +  N  YP
Sbjct: 184 DANQFNGSYP 193


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 499 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 410
           P L+     +G+  PK+ NAS Y+A    DNGDD
Sbjct: 75  PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,074
Number of Sequences: 37544
Number of extensions: 311869
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)