Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1542
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   6.9  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        28   9.1  
SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   9.1  

>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 189 YHHRYHRSRSTYLSQQIIILSMIVTTMNT 103
           YHH +H   +  +   II +++I+T  NT
Sbjct: 244 YHHHHHHHNNNTIITTIITITIIITINNT 272


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 611 DYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL 712
           DY++D KL  DA +  D +FE+++ +N    A L
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL 406


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -2

Query: 412 DTTFFFLSSSLQNFAENLVIAEDKAFESILRTG---FFISNSVNSINKTLANIIDKINPL 242
           D +   +S+S+Q F   LV++      ++L       F+SNSV  +N ++ + I   N +
Sbjct: 534 DDSVISVSNSVQ-FVNYLVLSTIFVGNAVLFVDDSVIFVSNSVQFVNYSVLSTIFVGNSV 592

Query: 241 VYYDSSIIFTST 206
           ++ D S+I  S+
Sbjct: 593 LFVDDSVISVSS 604


>SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -2

Query: 388 SSLQNFAENLVIAEDKAFESILRTGFFISNSVNSINKTLANIIDKINPLVYYDSSIIFTS 209
           +S+++F + +   +D+    I ++   + NS+ S+  ++ +    I P + +D+      
Sbjct: 507 ASIESFNDIISDGDDEMMSDIRKSVSDVRNSIISLRSSIEDEDFMIKPSIKWDTPTFVQQ 566

Query: 208 TEENK---ILSPPV 176
             +NK   I  PPV
Sbjct: 567 PAQNKPGSIFDPPV 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,232,339
Number of Sequences: 59808
Number of extensions: 377657
Number of successful extensions: 944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)