Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1542
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    31   0.80 
At1g51170.1 68414.m05754 protein kinase family protein                 28   5.6  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    28   7.4  
At1g16690.2 68414.m01999 transcription factor-related similar to...    28   7.4  
At1g16690.1 68414.m01998 transcription factor-related similar to...    28   7.4  
At4g23150.1 68417.m03341 protein kinase family protein contains ...    27   9.8  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 402 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 506
           NVV SP+S   LL+LI  G+     EE+L+ L  P
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSP 65


>At1g51170.1 68414.m05754 protein kinase family protein
          Length = 404

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 594 YTSRRVTMSSTQNLRRTLSRYSMQILKKLTSITEPQP 704
           +  + V  SS  +LRR  +R+ +QIL++L+  T P P
Sbjct: 52  FALKLVDKSSASSLRR--ARWEIQILRRLSDDTNPNP 86


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 558 DFNFDDTAENDERIVSSPGYLG-LSIALRVQDQ*FPKLSTPASILLTMAMIQHSSFYPVH 382
           D  F+     D  +     Y+  + +A +  +Q   K+ T  S  +  ++ +HSS     
Sbjct: 233 DRPFEAMVSTDLGVAQQHNYVSPIRVANKTPEQGMSKMETDGSTSINRSIRRHSSLATYS 292

Query: 381 CKTLQRT 361
            KTLQR+
Sbjct: 293 RKTLQRS 299


>At1g16690.2 68414.m01999 transcription factor-related similar to
           enhancer of polycomb (GI:11907923)[Homo sapiens]
          Length = 439

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 286 INKTLANIIDKINPL-VYYDSSIIFTSTEE--NKILSPPVPSKS*YLLITTNYYLINDCH 116
           I K+  +  D+ NP  +  +S ++  S  E  +  + PPVPSK     I T  YL+ D +
Sbjct: 19  ILKSFKDFEDEDNPSSITRNSQLLRISAVEVVDNEVQPPVPSKKLISEIPTPQYLVVDTY 78

Query: 115 NYEY 104
             +Y
Sbjct: 79  ERDY 82


>At1g16690.1 68414.m01998 transcription factor-related similar to
           enhancer of polycomb (GI:11907923)[Homo sapiens]
          Length = 439

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 286 INKTLANIIDKINPL-VYYDSSIIFTSTEE--NKILSPPVPSKS*YLLITTNYYLINDCH 116
           I K+  +  D+ NP  +  +S ++  S  E  +  + PPVPSK     I T  YL+ D +
Sbjct: 19  ILKSFKDFEDEDNPSSITRNSQLLRISAVEVVDNEVQPPVPSKKLISEIPTPQYLVVDTY 78

Query: 115 NYEY 104
             +Y
Sbjct: 79  ERDY 82


>At4g23150.1 68417.m03341 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 659

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 555 FNFDDTAENDERIVSSPGYLGLSIALRVQ 469
           F  D T +N  RIV + GY+    A+R Q
Sbjct: 486 FGMDQTQQNTSRIVGTYGYMSPEYAMRGQ 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,236
Number of Sequences: 28952
Number of extensions: 274301
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)