Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1540
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   3.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.2  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   5.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 108 DLPGVNAYSDTHRLSINGHGLGQIHHVQSQKRN 10
           D+  VN   +   L+   H L Q  H+Q   +N
Sbjct: 457 DIDDVNFQEENLALTSTEHSLSQSQHIQKIPKN 489


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 108 DLPGVNAYSDTHRLSINGHGLGQIHHVQSQKRN 10
           D+  VN   +   L+   H L Q  H+Q   +N
Sbjct: 282 DIDDVNFQEENLALTSTEHSLSQSQHIQKIPKN 314


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 251 SSRMR*LYVSSLTLMVPGTPVVSQRLVRF 165
           S R   L++  L ++ PG PV+++ L  F
Sbjct: 570 SDRRLELFLELLPMLAPGAPVMTRYLGDF 598


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +1

Query: 79  ITIGIHSGEVVTGVIGHRMPRYCLFGNT--VNLTSRCETTGVPGT 207
           + + IHSG  +TG      P Y +  N   VNL  R    G   T
Sbjct: 114 VVVYIHSGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPLGFLST 158


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 625 KRFFYNKIICSCTIF 581
           K+ FY+KII S +IF
Sbjct: 229 KKVFYSKIIISGSIF 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,404
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)