Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1540
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    30   0.47 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.5  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   7.6  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    26   7.6  

>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 561 MFFIF*SDFLLKGIFLVF*TSTYFISTIRDHFLKTNTSHYSQPNTK*LYVVYE 403
           +F+++  DFLL  +F V    ++F   ++     T  S  S P+   LY+ ++
Sbjct: 95  LFYVYLIDFLLNVLFTVLFALSWFSKLVQSDSSSTEESADSDPSPSLLYLFFQ 147


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 497 LILYRRFVITF*KQTLPIILSRTQNDCMWSTRTLKH 390
           L+L+RR  I   ++ +P+ + ++  D  WS    KH
Sbjct: 99  LLLFRRVAIRHLRKHVPVYVFKSLGDSQWSIFIAKH 134


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 168 VYRIAEEAITRHAMTDHTCHDLPGVNAYSDTHRL 67
           VYR  EEA T+H   D   +     +AY+ T  L
Sbjct: 72  VYRTIEEACTKHPEVDVVVNFASSRSAYASTMEL 105


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   RNTFLFWLWT*WICPKP*PLMESLWVSL 85
           ++ FL W WT W+ P P  + + +W  L
Sbjct: 105 KDIFLEWNWTLWLTP-PETIAKMVWFPL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,426
Number of Sequences: 5004
Number of extensions: 58737
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)