Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1540
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0337 - 7422078-7422156,7422374-7422501                           30   2.0  
06_01_0626 + 4549661-4550947                                           29   6.1  
01_06_0015 + 25586433-25586571,25586684-25587231                       29   6.1  

>09_02_0337 - 7422078-7422156,7422374-7422501
          Length = 68

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 111 DRC--DRSSHASLLPLRQYGKPDQPLRNYWRSRDH 209
           D+C  DRSSH  L    +Y  P  P   YWRS DH
Sbjct: 4   DQCSSDRSSH-HLYEWARYNYPLGPRPAYWRSSDH 37


>06_01_0626 + 4549661-4550947
          Length = 428

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = -2

Query: 327 RFASVRLSPSWSRDRGT-SARTGH---RVVIAHEIVVCILADINGPGNASSFAAAGQVYR 160
           RF   R   SW+   G   +  G     V+   ++V C++ D NG GNAS   +    Y 
Sbjct: 339 RFCVARFYHSWTPTAGLFGSDLGELFFTVLTGTDVVQCVVHDGNGTGNASCNDSCNNPYG 398

Query: 159 IAEEAITRHAMTDHTCH 109
              +   R    +  CH
Sbjct: 399 SNGKVELRMIKHNSKCH 415


>01_06_0015 + 25586433-25586571,25586684-25587231
          Length = 228

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 GKPDQPLRNYWRSRDH*CQRGYIQL 236
           G+ D  ++NYWR++ H   RG  QL
Sbjct: 100 GRTDNEIKNYWRTKIHRKPRGRSQL 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,294
Number of Sequences: 37544
Number of extensions: 388760
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)