Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1540
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 4e-24
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27) 83 4e-16
SB_29094| Best HMM Match : Guanylate_cyc (HMM E-Value=7.9e-07) 80 2e-15
SB_37135| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 80 3e-15
SB_50980| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 64 2e-10
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 54 1e-07
SB_50731| Best HMM Match : Guanylate_cyc (HMM E-Value=0.76) 49 5e-06
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_2034| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 109 bits (261), Expect = 4e-24
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 180
A+ I +ALDM ++Q++ G+ + I IGIHSGEVV GV+GH+ PRYCLFGNTVNLTSR
Sbjct: 1533 ARSICNMALDMKHVTQSIIHKGDKIQIKIGIHSGEVVAGVVGHKTPRYCLFGNTVNLTSR 1592
Query: 181 CETTGVPGTINVSEDTYNYLMRDD 252
ETTG PG +N++E TY L+ +
Sbjct: 1593 TETTGAPGQVNITEFTYRCLLEPE 1616
Score = 103 bits (248), Expect = 1e-22
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 180
A +I+ LALDM+D+S+ + G + +TIGIHSGEVV GV+G + PRYCLFGNTVNLTSR
Sbjct: 985 ALNIANLALDMIDISKGMKAKGIQLQVTIGIHSGEVVAGVVGQKKPRYCLFGNTVNLTSR 1044
Query: 181 CETTGVPGTINVSEDTY 231
ETTG+ G INVSE Y
Sbjct: 1045 TETTGLKGKINVSEYAY 1061
Score = 78.2 bits (184), Expect = 8e-15
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 AKHISLLALDMMD-LSQTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 177
A H++L+A+ M+D + ++ +G P+ + +GIH+G V++GV+G +MPRYCLFG+ V L +
Sbjct: 528 AYHVALMAVGMIDHIRDVLSPEGVPLKMRVGIHTGSVLSGVVGTKMPRYCLFGHDVTLAN 587
Query: 178 RCETTGVPGTINVSEDTY 231
+ E+ G IN+S TY
Sbjct: 588 KMESESEAGRINISPTTY 605
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 258 DDQFELTYRGHVTMKGKAEPMQTWFLTR 341
D F RG V MKG+ EPM T+ LTR
Sbjct: 1619 DPSFVFERRGPVAMKGRQEPMVTYLLTR 1646
>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
Length = 517
Score = 82.6 bits (195), Expect = 4e-16
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 4/74 (5%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQTVTVDGEPVG----ITIGIHSGEVVTGVIGHRMPRYCLFGNTVN 168
A I ++LD++ L++T T+D P G + +GIH+G V+GV+G++MPRYCLFG+TVN
Sbjct: 390 ADEIGRMSLDLVRLTETTTLDSVPKGKKLMVRVGIHTGPCVSGVVGYKMPRYCLFGDTVN 449
Query: 169 LTSRCETTGVPGTI 210
SR +TTG+P I
Sbjct: 450 TASRMQTTGIPNVI 463
>SB_29094| Best HMM Match : Guanylate_cyc (HMM E-Value=7.9e-07)
Length = 235
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/62 (58%), Positives = 45/62 (72%)
Frame = +1
Query: 58 VDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNY 237
VD EP+ I IGIH+G V+ GV+G +MPRYCLFGNTV L ++ E+ PG IN+S DT
Sbjct: 11 VDREPLKIRIGIHTGPVMPGVVGKKMPRYCLFGNTVTLANKMESGSQPGRINISIDTKRL 70
Query: 238 LM 243
LM
Sbjct: 71 LM 72
>SB_37135| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 584
Score = 79.8 bits (188), Expect = 3e-15
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQTVTVDG---EPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNL 171
A+H++ +AL+M+ + + + I IGIH+G VV GV+G +MPRYCLFG+TVN
Sbjct: 479 AEHVADMALNMLSAMPEIEDPAGLNDHLRIRIGIHTGTVVAGVVGLKMPRYCLFGDTVNT 538
Query: 172 TSRCETTGVPGTINVSEDTYNYLMR 246
SR E+TG+ I+VSEDT +L +
Sbjct: 539 ASRMESTGLAMAIHVSEDTQKFLAK 563
>SB_50980| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 313
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQT-VTVDGEP---VGITIGIHSGEVVTGVIGHRMPRYCLFGNTVN 168
A I+ ++L ++D QT V +P + + +GIHSG VV GV+G+ MPRYCLFG+TVN
Sbjct: 242 AGEIARMSLHLVDAVQTEFCVRHKPEYKLKLRVGIHSGPVVAGVVGNTMPRYCLFGDTVN 301
Query: 169 LTSRCETTG 195
SR E+ G
Sbjct: 302 TASRMESNG 310
>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 59.3 bits (137), Expect = 4e-09
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = +1
Query: 46 QTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSED 225
+T E + GI G +V GVIG + P Y ++GNTVN+ SR ETTG G I ++
Sbjct: 1010 ETTRFYSENDSVVFGICQGPIVAGVIGAKKPHYDIWGNTVNVASRMETTGKAGCIQITAQ 1069
Query: 226 TYNYLMRDD 252
TY + D
Sbjct: 1070 TYETIKDKD 1078
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +1
Query: 73 VGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYN 234
+ + +GIH+G V+ GV+G R ++ + N V L + E+ G+PG +++SE T N
Sbjct: 616 LNMRVGIHTGMVLAGVLGQRKWQFEAWSNDVTLANHMESGGIPGRVHISEPTLN 669
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 57.6 bits (133), Expect = 1e-08
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 AKHISLLALDMMD-LSQTVTVDGEP---VGITIGIHSGEVVTGVIGHRMPRYCLFGNTVN 168
A I+ +AL ++D +S V +P + + +G H+G VV GV+G+ M RYCLFG+TVN
Sbjct: 946 AGEIAKMALHLVDAVSHNFIVRHKPEYKLQLRVGCHTGPVVAGVVGNTMARYCLFGDTVN 1005
Query: 169 LTSRCETTG 195
SR E+ G
Sbjct: 1006 TASRMESNG 1014
>SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 1 AKHISLLALDMMDLSQTVTVDGEP---VGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNL 171
A I+ ++L +++ ++ P + +GIH+G V G++G + PRY +FG TVN+
Sbjct: 135 ASEIAAMSLHLLNYVTDFRIEHLPDTRLEFRMGIHTGPCVAGIVGLKKPRYDIFGETVNI 194
Query: 172 TSRCETTGVPGTINVSEDTYNYL 240
E+ G+P +I+VS T L
Sbjct: 195 VKHLESAGIPQSIHVSSPTCRLL 217
>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1055
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +1
Query: 19 LALDMMDLSQTVTVDGE-PVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTG 195
+ LDM++ + D + V + +G+H+G V+ G++G + ++ ++ N V L +R ET G
Sbjct: 380 MGLDMLEQIKEFDNDTDNDVDMRVGVHTGTVLCGIVGTKRFKFDVWSNDVTLANRMETAG 439
Query: 196 VPGTINVSEDTYNYL 240
+PG ++++E T +L
Sbjct: 440 LPGRVHITEATVGFL 454
Score = 52.0 bits (119), Expect = 6e-07
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +1
Query: 79 ITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNYL 240
+ IG ++G V GVIG Y ++G+TVNL SR ++TGVP I VSE T L
Sbjct: 972 LRIGFNAGPVTAGVIGTTKLLYDIWGDTVNLASRMDSTGVPEKIQVSESTKEML 1025
>SB_50731| Best HMM Match : Guanylate_cyc (HMM E-Value=0.76)
Length = 64
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +1
Query: 109 VTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNYLM 243
V GV+G + PRY +FG+TVN+ SR E+ GVP I++S + L+
Sbjct: 4 VAGVVGIKKPRYDVFGDTVNVASRMESNGVPNRIHISAECRKALL 48
>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 85 IGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNYL 240
+ ++ G VV GVIG P+Y ++G+TVN+ SR +TG I V++ Y L
Sbjct: 917 VSLNFGPVVAGVIGAHKPQYDIWGDTVNVASRMYSTGKDNHIQVTKAMYEIL 968
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 73 VGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPG 204
+ + +G+H G+V +GV+G +Y ++ + V + + E+ G+PG
Sbjct: 551 LNMRVGVHMGKVHSGVLGLVKWQYDVWSDDVTIANHMESGGLPG 594
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 29.9 bits (64), Expect = 2.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 166 LPYCRRGNNEACDDRSHLS 110
+P+C GNNE C D +H++
Sbjct: 423 VPHCSHGNNERCYDNTHMT 441
>SB_2034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1003
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 124 GHRMPRYCLFGNTVNLTSRCETTGVP-GTINVSED 225
G + P + GNT+ +T +C+ TG+P T+ +++D
Sbjct: 259 GSKTPLHSFVGNTIPVTIKCQFTGLPMPTVVMTKD 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,706,922
Number of Sequences: 59808
Number of extensions: 471767
Number of successful extensions: 1052
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -