Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1540
(838 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 135 4e-34
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 135 4e-34
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 72 6e-15
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 66 5e-13
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 56 3e-10
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 8.1
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 135 bits (327), Expect = 4e-34
Identities = 66/86 (76%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 AKHISLLALDMMDLS-QTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 177
A+ I+ LALDMMDL+ V +DGEPV ITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS
Sbjct: 483 ARCIARLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 542
Query: 178 RCETTGVPGTINVSEDTYNYLMRDDN 255
R ETTG PG INVSED Y YL +N
Sbjct: 543 RTETTGEPGKINVSEDAYRYLCMPEN 568
Score = 48.0 bits (109), Expect = 1e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3
Query: 258 DDQFELTYRGHVTMKGKAEPMQTWFLTRK 344
D QF L YRG VTMKGK+EPM WFL+R+
Sbjct: 570 DSQFLLEYRGPVTMKGKSEPMNVWFLSRE 598
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 135 bits (327), Expect = 4e-34
Identities = 66/86 (76%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 AKHISLLALDMMDLS-QTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 177
A+ I+ LALDMMDL+ V +DGEPV ITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS
Sbjct: 483 ARCIARLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 542
Query: 178 RCETTGVPGTINVSEDTYNYLMRDDN 255
R ETTG PG INVSED Y YL +N
Sbjct: 543 RTETTGEPGKINVSEDAYRYLCMPEN 568
Score = 48.0 bits (109), Expect = 1e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3
Query: 258 DDQFELTYRGHVTMKGKAEPMQTWFLTRK 344
D QF L YRG VTMKGK+EPM WFL+R+
Sbjct: 570 DSQFLLEYRGPVTMKGKSEPMNVWFLSRE 598
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 72.1 bits (169), Expect = 6e-15
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 AKHISLLALDMMDL-SQTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 177
A+ I+ +AL M+ S +T G+P+ + IGIH+G V+ GV+G +MPRYCLFG+ V L +
Sbjct: 556 AQQIAWMALKMIQACSHHLTHKGKPIRMRIGIHTGMVLAGVVGKKMPRYCLFGHNVTLAN 615
Query: 178 RCETTGVPGTINVSEDTY 231
+ E+ P I+VS TY
Sbjct: 616 KFESLSEPLRIHVSPTTY 633
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 65.7 bits (153), Expect = 5e-13
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 1 AKHISLLALDMM----DLSQTVTVDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVN 168
A + +ALDM+ DL T G + I +G+HSG VV G++G +MPRYCLFG++VN
Sbjct: 489 ADRVCDMALDMVEAITDLKDRST--GLHLQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVN 546
Query: 169 LTSRCETTGVPGTINVSEDTYNYL 240
SR E T I++S+ T L
Sbjct: 547 TASRMEATSQAMQIHISQSTKELL 570
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 56.4 bits (130), Expect = 3e-10
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 79 ITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNYL 240
+ +GI+ G V GVIG R P Y ++GNTVN+ SR E+TG G I V+++T L
Sbjct: 894 LKMGINHGPVTAGVIGARKPHYDIWGNTVNVASRMESTGKVGCIQVTDETRKIL 947
Score = 50.4 bits (115), Expect = 2e-08
Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +1
Query: 19 LALDMMDLSQTVT-VDGEPVGITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTG 195
+ L M++ + V PV + +GIH+G V+ GV+G R ++ ++ V L ++ E++G
Sbjct: 344 MGLSMVEAIKYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMESSG 403
Query: 196 VPGTINVSEDTYNYL 240
+ G +++S T ++L
Sbjct: 404 MAGRVHISNATLSFL 418
Score = 23.0 bits (47), Expect = 3.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 291 RDRGTSARTGHRVVIA--HEIVVCILADINGPGNASSFAAAGQVYRIAEEAITR 136
+D G S T + + HE V + ADI G SS +A ++ +I E R
Sbjct: 251 QDLGASLDTQFKKIYMSRHENVSILYADIVGFTAISSTYSASELVKILNELFAR 304
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 8.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 124 GHRMPRYCLFGNTVNLTSRCETTGVPGTINVSEDTYNYLMRDDNTMTSS 270
G +P + G T+ TT PG+ ++ + + D + TSS
Sbjct: 211 GRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSS 259
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,269
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -