Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1540
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10290.1 68416.m01233 phosphate translocator-related low simi...    28   6.7  
At1g43630.1 68414.m05009 expressed protein                             28   6.7  
At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase, mitoc...    28   8.8  
At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase, mitoc...    28   8.8  

>At3g10290.1 68416.m01233 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 355

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 332 EPGLHRFGFPLHGHVTAVRQLELV---IVLSSRMR*LYVSSLTLMVPGTPVVSQRLVRFT 162
           EPG H FGF +    TA R  + V   I+LSS    L  +S+ LM+  +P+    L+  T
Sbjct: 198 EPGFHWFGFIMCISATAARAFKSVLQGILLSSEGERL--NSMNLMLYMSPIAVIALLPVT 255

Query: 161 V 159
           +
Sbjct: 256 I 256


>At1g43630.1 68414.m05009 expressed protein
          Length = 383

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 371 FVINYLINRLPCQEPGLH-RFGFPLH 297
           FV   L+  +PCQ+ GLH  F FP H
Sbjct: 244 FVTWVLVAAIPCQDRGLHVHFYFPRH 269


>At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase,
           mitochondrial / glyoxalase II (GLX2-1) identical to
           SP|O24495 Hydroxyacylglutathione hydrolase,
           mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
           (Glx II) {Arabidopsis thaliana}
          Length = 313

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +1

Query: 133 MPRYCLFG--NTVNLTSRCETTGVPGTINV-----SEDTYNYLMRDDNTMT 264
           MP   L G   T+ +T  C  + +P ++ +     S+D Y YL+ D++T T
Sbjct: 33  MPLKTLRGARKTLKITHFCSISNMPSSLKIELVPCSKDNYAYLLHDEDTGT 83


>At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase,
           mitochondrial / glyoxalase II (GLX2-1) identical to
           SP|O24495 Hydroxyacylglutathione hydrolase,
           mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
           (Glx II) {Arabidopsis thaliana}
          Length = 331

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +1

Query: 133 MPRYCLFG--NTVNLTSRCETTGVPGTINV-----SEDTYNYLMRDDNTMT 264
           MP   L G   T+ +T  C  + +P ++ +     S+D Y YL+ D++T T
Sbjct: 51  MPLKTLRGARKTLKITHFCSISNMPSSLKIELVPCSKDNYAYLLHDEDTGT 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,440
Number of Sequences: 28952
Number of extensions: 308649
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)