BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1538 (719 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-... 40 0.047 UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L... 38 0.33 UniRef50_Q0I2Q8 Cluster: Lipopolysaccharide cholinephosphotransf... 36 0.76 UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.1 UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium lot... 33 7.1 UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb... 33 7.1 >UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like protein; n=25; Arthropoda|Rep: Endonuclease and reverse transcriptase-like protein - Bombyx mori (Silk moth) Length = 986 Score = 40.3 bits (90), Expect = 0.047 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = -3 Query: 708 SGRQRLGSAPGITDVHGRR 652 SGRQRLGSAPGI +VHGRR Sbjct: 968 SGRQRLGSAPGIAEVHGRR 986 >UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm) Length = 248 Score = 37.5 bits (83), Expect = 0.33 Identities = 16/20 (80%), Positives = 16/20 (80%) Frame = -1 Query: 662 MGDGNHSPSGGPCARLPTMA 603 MGDGNHSPSG P A LPT A Sbjct: 1 MGDGNHSPSGRPYASLPTRA 20 >UniRef50_Q0I2Q8 Cluster: Lipopolysaccharide cholinephosphotransferase; n=1; Haemophilus somnus 129PT|Rep: Lipopolysaccharide cholinephosphotransferase - Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt)) Length = 218 Score = 36.3 bits (80), Expect = 0.76 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -2 Query: 547 CYYKLKFSESPAQIMHTASQMMYIKIKHNISRLTTTKNRKSDCNLKL 407 C+Y+ K +I+ SQ+ Y K++ N+SRL T N K+ N+ L Sbjct: 140 CFYRAKDKSGCKKILGKLSQIYYEKMQANLSRLRETYNEKNSDNIGL 186 >UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; Bombyx mori|Rep: Putative uncharacterized protein - Bombyx mori (Silk moth) Length = 85 Score = 34.3 bits (75), Expect = 3.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 590 FFFLVPL*ADERTAHLMASGYRRPWTSVMPGAEPS-RCL 703 F F + +T +L+ +R WTS +PGA+P RCL Sbjct: 25 FIFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCL 63 >UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium loti|Rep: Mll0115 protein - Rhizobium loti (Mesorhizobium loti) Length = 301 Score = 33.1 bits (72), Expect = 7.1 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +2 Query: 617 DERTAHLMASGYRRPWTSVMPGAEPSR 697 D AH A+G RPW V P AEPSR Sbjct: 96 DALLAHYRAAGISRPWFYVNPHAEPSR 122 >UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx mori (Silk moth) Length = 782 Score = 33.1 bits (72), Expect = 7.1 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = -1 Query: 251 YLPVRTHKRSYHQSTC 204 YLP RTHKRSYH+ C Sbjct: 573 YLPARTHKRSYHRYQC 588 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 604,712,631 Number of Sequences: 1657284 Number of extensions: 10401665 Number of successful extensions: 22165 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 21578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22158 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 58264468239 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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