Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1538
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.047
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    38   0.33 
UniRef50_Q0I2Q8 Cluster: Lipopolysaccharide cholinephosphotransf...    36   0.76 
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium lot...    33   7.1  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   7.1  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 40.3 bits (90), Expect = 0.047
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -3

Query: 708  SGRQRLGSAPGITDVHGRR 652
            SGRQRLGSAPGI +VHGRR
Sbjct: 968  SGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = -1

Query: 662 MGDGNHSPSGGPCARLPTMA 603
           MGDGNHSPSG P A LPT A
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q0I2Q8 Cluster: Lipopolysaccharide
           cholinephosphotransferase; n=1; Haemophilus somnus
           129PT|Rep: Lipopolysaccharide cholinephosphotransferase
           - Haemophilus somnus (strain 129Pt) (Histophilus somni
           (strain 129Pt))
          Length = 218

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -2

Query: 547 CYYKLKFSESPAQIMHTASQMMYIKIKHNISRLTTTKNRKSDCNLKL 407
           C+Y+ K      +I+   SQ+ Y K++ N+SRL  T N K+  N+ L
Sbjct: 140 CFYRAKDKSGCKKILGKLSQIYYEKMQANLSRLRETYNEKNSDNIGL 186


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 590 FFFLVPL*ADERTAHLMASGYRRPWTSVMPGAEPS-RCL 703
           F F +      +T +L+   +R  WTS +PGA+P  RCL
Sbjct: 25  FIFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCL 63


>UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium
           loti|Rep: Mll0115 protein - Rhizobium loti
           (Mesorhizobium loti)
          Length = 301

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 617 DERTAHLMASGYRRPWTSVMPGAEPSR 697
           D   AH  A+G  RPW  V P AEPSR
Sbjct: 96  DALLAHYRAAGISRPWFYVNPHAEPSR 122


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 251 YLPVRTHKRSYHQSTC 204
           YLP RTHKRSYH+  C
Sbjct: 573 YLPARTHKRSYHRYQC 588


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,712,631
Number of Sequences: 1657284
Number of extensions: 10401665
Number of successful extensions: 22165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22158
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)