Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1538
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.2  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 133 WERTHLNLTM*PPPGAKAGSALEQQVDWW*DL 228
           W R H  LT+ P P   + +  +Q   W+ DL
Sbjct: 223 WLRIHTFLTLFPVPSVLSSNLKKQMYGWFEDL 254


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 672 TDVHGRR*PLAIRWAVRSSAYNGTKKK 592
           T++ GR  P+A+ WAV   A+  T  K
Sbjct: 171 TEIDGR--PIAVDWAVSKDAFEATTLK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,742
Number of Sequences: 5004
Number of extensions: 42526
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)