Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1538
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0734 + 5419951-5420475                                           29   3.7  
10_01_0274 - 2901033-2901778,2902475-2902634                           29   4.9  
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847...    28   6.5  
11_02_0038 - 7631462-7634428,7635975-7636250                           28   8.6  

>06_01_0734 + 5419951-5420475
          Length = 174

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -1

Query: 701 GSGLALPLALLMSMGDGNHSPSG 633
           G GL   LA LM MGDG  SP G
Sbjct: 108 GGGLMYLLAQLMGMGDGGGSPYG 130


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 596 FLVPL*ADERTAHLMASGYRRPWTSVMPGAEPSRCLPLA 712
           F VPL AD R A  +A  +     +  PG EPS+  PL+
Sbjct: 83  FAVPLAADLRGADCVAQLHSAATDAPCPGQEPSKIEPLS 121


>06_03_1084 +
           27483276-27483492,27483991-27484121,27484685-27484740,
           27484834-27484891,27484970-27485113,27485270-27485353,
           27485434-27485514,27485776-27485889,27486196-27486281,
           27486376-27486436,27487343-27487525,27487987-27488038,
           27488080-27488135,27488197-27488258,27488498-27488581,
           27488899-27489030,27490220-27490316
          Length = 565

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 230 KRSYHQSTCCSRADPALAPGGGHIVKFRCVRS 135
           +R  H+  CC R +PA  P     V+ R V S
Sbjct: 44  RRGRHEVACCVRTEPAPRPASPVAVRSRSVHS 75


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 473 FYVHHLRCSMHDLCR 517
           FY  H RC MHDL R
Sbjct: 560 FYFDHYRCKMHDLLR 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,274
Number of Sequences: 37544
Number of extensions: 294162
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)