Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1535X
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    40   2e-04
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   8.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.5  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 37/60 (61%)
 Frame = +2

Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +1

Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDI 588
           R AAE HRQ R++ ++ +KPGM+M+D+
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDV 144


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 548 MCFLVCLWASAACRFPDKYLYVIYQELFSPHL*NDFLQFSHQYPQ 414
           +C+ V + +      P  ++Y +     +  +  +FL F H YPQ
Sbjct: 350 VCYCVEVHSQQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQ 394


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 520 EAHRQTRKHIRNWLKPGMTMIDIC 591
           E+H +T +H +  + P   +ID+C
Sbjct: 397 ESHSRTLRHEKRHVSPKSPLIDVC 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,152
Number of Sequences: 5004
Number of extensions: 28422
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)